STRINGSTRING
VDBG_08591 VDBG_08591 VDBG_08242 VDBG_08242 VDBG_08639 VDBG_08639 VDBG_08937 VDBG_08937 VDBG_00245 VDBG_00245 VDBG_00297 VDBG_00297 VDBG_00923 VDBG_00923 VDBG_00936 VDBG_00936 VDBG_00045 VDBG_00045 VDBG_00203 VDBG_00203 VDBG_02106 VDBG_02106 VDBG_01534 VDBG_01534 VDBG_02521 VDBG_02521 VDBG_03431 VDBG_03431 VDBG_04104 VDBG_04104 VDBG_04805 VDBG_04805 VDBG_04806 VDBG_04806 VDBG_04933 VDBG_04933 VDBG_05031 VDBG_05031 VDBG_04392 VDBG_04392 VDBG_04394 VDBG_04394 VDBG_04462 VDBG_04462 VDBG_04463 VDBG_04463 VDBG_05110 VDBG_05110 VDBG_05176 VDBG_05176 VDBG_05519 VDBG_05519 VDBG_05979 VDBG_05979 VDBG_06806 VDBG_06806 VDBG_07196 VDBG_07196 VDBG_06978 VDBG_06978 VDBG_07748 VDBG_07748 VDBG_07920 VDBG_07920 VDBG_08552 VDBG_08552
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_08591Uncharacterized protein. (383 aa)
VDBG_08242Histone deacetylase HOS3. (907 aa)
VDBG_08639RING-box protein. (119 aa)
VDBG_08937Uncharacterized protein. (278 aa)
VDBG_00245Anaphase-promoting complex subunit 8. (593 aa)
VDBG_00297Predicted protein. (165 aa)
VDBG_00923Transcription termination factor 2. (924 aa)
VDBG_00936JmjC domain-containing protein. (546 aa)
VDBG_00045G2/mitotic-specific cyclin cdc13; Belongs to the cyclin family. (704 aa)
VDBG_00203Ubiquitin-conjugating enzyme. (236 aa)
VDBG_02106Transcription factor MBP1. (705 aa)
VDBG_01534Serine/threonine-protein phosphatase. (347 aa)
VDBG_02521Sulfur controller 2. (646 aa)
VDBG_03431PC_rep repeat-containing protein. (1830 aa)
VDBG_04104Anaphase-promoting complex subunit cut9. (620 aa)
VDBG_04805Helicase ATP-binding domain-containing protein. (672 aa)
VDBG_04806Helicase C-terminal domain-containing protein. (381 aa)
VDBG_04933Calcium/calmodulin-dependent protein kinase; Belongs to the protein kinase superfamily. (407 aa)
VDBG_05031M-phase inducer phosphatase. (481 aa)
VDBG_04392Uncharacterized protein. (81 aa)
VDBG_04394Transcription termination factor 2. (868 aa)
VDBG_04462Uncharacterized protein. (390 aa)
VDBG_04463Anaphase-promoting complex subunit 2; Belongs to the cullin family. (357 aa)
VDBG_05110G2/mitotic-specific cyclin-B; Belongs to the cyclin family. (436 aa)
VDBG_05176Uncharacterized protein; Belongs to the actin family. (441 aa)
VDBG_05519Cell division control protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (338 aa)
VDBG_05979Serine/threonine-protein kinase plo1. (1002 aa)
VDBG_06806BimA. (835 aa)
VDBG_07196G2/mitotic-specific cyclin-4; Belongs to the cyclin family. (233 aa)
VDBG_06978Protein tyrosine kinase; Belongs to the protein kinase superfamily. (323 aa)
VDBG_07748Predicted protein. (149 aa)
VDBG_07920Cell division protein kinase. (254 aa)
VDBG_08552Start control protein cdc10. (821 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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