STRINGSTRING
VDBG_03076 VDBG_03076 VDBG_00343 VDBG_00343 VDBG_01179 VDBG_01179 VDBG_00370 VDBG_00370 VDBG_00524 VDBG_00524 VDBG_00552 VDBG_00552 VDBG_00621 VDBG_00621 VDBG_01297 VDBG_01297 VDBG_00750 VDBG_00750 VDBG_00830 VDBG_00830 VDBG_00851 VDBG_00851 VDBG_00894 VDBG_00894 VDBG_00081 VDBG_00081 VDBG_00145 VDBG_00145 VDBG_01110 VDBG_01110 VDBG_02260 VDBG_02260 VDBG_01482 VDBG_01482 VDBG_01492 VDBG_01492 VDBG_02439 VDBG_02439 VDBG_01566 VDBG_01566 VDBG_01572 VDBG_01572 VDBG_01622 VDBG_01622 VDBG_01652 VDBG_01652 VDBG_01687 VDBG_01687 VDBG_02496 VDBG_02496 VDBG_01763 VDBG_01763 VDBG_01805 VDBG_01805 VDBG_01807 VDBG_01807 VDBG_01808 VDBG_01808 VDBG_01811 VDBG_01811 VDBG_01818 VDBG_01818 VDBG_01823 VDBG_01823 VDBG_01877 VDBG_01877 VDBG_01911 VDBG_01911 VDBG_01963 VDBG_01963 VDBG_01964 VDBG_01964 VDBG_01965 VDBG_01965 VDBG_01984 VDBG_01984 VDBG_02826 VDBG_02826 VDBG_02892 VDBG_02892 VDBG_02979 VDBG_02979 VDBG_03012 VDBG_03012 VDBG_07138 VDBG_07138 VDBG_07219 VDBG_07219 VDBG_07294 VDBG_07294 VDBG_07295 VDBG_07295 VDBG_07382 VDBG_07382 VDBG_07389 VDBG_07389 VDBG_07390 VDBG_07390 VDBG_06985 VDBG_06985 VDBG_07438 VDBG_07438 VDBG_07838 VDBG_07838 VDBG_07851 VDBG_07851 VDBG_07886 VDBG_07886 VDBG_07910 VDBG_07910 VDBG_07962 VDBG_07962 VDBG_08012 VDBG_08012 VDBG_08092 VDBG_08092 VDBG_08319 VDBG_08319 VDBG_08394 VDBG_08394 VDBG_08256 VDBG_08256 VDBG_08650 VDBG_08650 VDBG_08665 VDBG_08665 TIF6 TIF6 VDBG_08747 VDBG_08747 VDBG_08803 VDBG_08803 VDBG_08891 VDBG_08891 VDBG_08920 VDBG_08920 VDBG_08951 VDBG_08951 VDBG_09650 VDBG_09650 VDBG_09661 VDBG_09661 VDBG_09345 VDBG_09345 VDBG_09701 VDBG_09701 VDBG_09716 VDBG_09716 VDBG_09759 VDBG_09759 VDBG_03098 VDBG_03098 VDBG_03099 VDBG_03099 VDBG_02516 VDBG_02516 VDBG_03264 VDBG_03264 VDBG_02577 VDBG_02577 VDBG_02589 VDBG_02589 VDBG_02647 VDBG_02647 VDBG_02750 VDBG_02750 VDBG_03865 VDBG_03865 VDBG_04006 VDBG_04006 VDBG_04019 VDBG_04019 VDBG_04056 VDBG_04056 VDBG_03488 VDBG_03488 VDBG_03528 VDBG_03528 VDBG_03532 VDBG_03532 VDBG_04196 VDBG_04196 VDBG_04208 VDBG_04208 VDBG_03617 VDBG_03617 VDBG_04293 VDBG_04293 VDBG_03678 VDBG_03678 VDBG_04294 VDBG_04294 GUF1 GUF1 VDBG_04321 VDBG_04321 VDBG_03732 VDBG_03732 VDBG_03758 VDBG_03758 VDBG_03768 VDBG_03768 VDBG_03784 VDBG_03784 VDBG_03815 VDBG_03815 VDBG_04568 VDBG_04568 VDBG_04721 VDBG_04721 VDBG_04830 VDBG_04830 VDBG_04861 VDBG_04861 VDBG_05009 VDBG_05009 VDBG_04353 VDBG_04353 VDBG_04398 VDBG_04398 VDBG_05802 VDBG_05802 VDBG_05815 VDBG_05815 VDBG_05087 VDBG_05087 VDBG_05368 VDBG_05368 VDBG_05454 VDBG_05454 VDBG_05564 VDBG_05564 VDBG_05573 VDBG_05573 VDBG_05879 VDBG_05879 VDBG_05880 VDBG_05880 VDBG_05970 VDBG_05970 VDBG_06021 VDBG_06021 VDBG_06161 VDBG_06161 VDBG_06384 VDBG_06384 VDBG_06448 VDBG_06448 VDBG_06486 VDBG_06486 VDBG_06543 VDBG_06543 VDBG_06672 VDBG_06672 VDBG_06673 VDBG_06673 VDBG_06877 VDBG_06877 VDBG_06937 VDBG_06937 VDBG_06938 VDBG_06938 VDBG_07039 VDBG_07039 VDBG_07046 VDBG_07046 VDBG_07051 VDBG_07051 VDBG_07070 VDBG_07070
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_03076Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (231 aa)
VDBG_00343FACT complex subunit SPT16. (1014 aa)
VDBG_01179WD repeat-containing protein. (475 aa)
VDBG_00370Chromodomain-helicase-DNA-binding protein. (1710 aa)
VDBG_00524Guanine nucleotide-binding protein alpha-2 subunit. (354 aa)
VDBG_00552DNA excision repair protein ERCC-8. (278 aa)
VDBG_0062160S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (109 aa)
VDBG_01297Spindle assembly checkpoint component MAD1. (735 aa)
VDBG_00750Eukaryotic translation initiation factor 5A. (161 aa)
VDBG_00830Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family. (619 aa)
VDBG_00851Elongation factor 2. (820 aa)
VDBG_00894GTP-binding protein. (574 aa)
VDBG_00081Uncharacterized protein. (148 aa)
VDBG_00145Microtubule-associated protein ytm1. (330 aa)
VDBG_01110Zfp294 protein. (1523 aa)
VDBG_02260NADH-ubiquinone oxidoreductase; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (176 aa)
VDBG_01482HNRNP arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (547 aa)
VDBG_01492Uncharacterized protein. (426 aa)
VDBG_02439C6 zinc finger domain-containing protein. (556 aa)
VDBG_01566Actin-related protein 2/3 complex subunit 5; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. (130 aa)
VDBG_01572Uncharacterized protein. (409 aa)
VDBG_01622Eukaryotic translation initiation factor 2 subunit alpha. (313 aa)
VDBG_01652Myosin-9; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2368 aa)
VDBG_01687Signal recognition particle receptor subunit alpha. (636 aa)
VDBG_02496Zinc finger protein. (812 aa)
VDBG_01763WH1 domain-containing protein. (78 aa)
VDBG_01805Woronin body major protein. (131 aa)
VDBG_01807DUF814 domain-containing protein. (1107 aa)
VDBG_01808NFACT-C domain-containing protein. (224 aa)
VDBG_01811EST1_DNA_bind domain-containing protein. (734 aa)
VDBG_01818Phosducin family protein. (259 aa)
VDBG_01823Uncharacterized protein. (246 aa)
VDBG_01877Serine-threonine kinase receptor-associated protein. (313 aa)
VDBG_01911Zuotin. (444 aa)
VDBG_01963Ubiquitin carboxyl-terminal hydrolase. (541 aa)
VDBG_01964Actin-related protein 2/3 complex subunit 4; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament; Belongs to the ARPC4 family. (169 aa)
VDBG_01965Uncharacterized protein. (685 aa)
VDBG_01984SLA2. (1032 aa)
VDBG_02826Alpha-actinin-1. (717 aa)
VDBG_02892Uncharacterized protein. (809 aa)
VDBG_02979Uncharacterized protein. (295 aa)
VDBG_03012Chitin synthase export chaperone. (296 aa)
VDBG_07138Zn(2)-C6 fungal-type domain-containing protein. (452 aa)
VDBG_07219Uncharacterized protein. (315 aa)
VDBG_0729426S proteasome regulatory subunit rpn11. (336 aa)
VDBG_07295Uncharacterized protein. (313 aa)
VDBG_07382WD repeat-containing protein slp1. (600 aa)
VDBG_07389RRN9 domain-containing protein. (702 aa)
VDBG_07390Pescadillo. (496 aa)
VDBG_06985SH3 domain-containing protein. (276 aa)
VDBG_07438NADH-ubiquinone oxidoreductase 40 kDa subunit. (375 aa)
VDBG_07838Uncharacterized protein. (1956 aa)
VDBG_07851Protein HIR; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family. (1054 aa)
VDBG_07886Uncharacterized protein. (198 aa)
VDBG_07910E3 ubiquitin-protein ligase UPL3. (1790 aa)
VDBG_07962SH3 domain-containing protein. (369 aa)
VDBG_08012Uncharacterized protein. (631 aa)
VDBG_08092Pre-rRNA-processing protein TSR2. (206 aa)
VDBG_08319Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (721 aa)
VDBG_0839460S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (502 aa)
VDBG_08256SH3 domain-containing protein. (551 aa)
VDBG_08650Transcriptional repressor rco-1. (103 aa)
VDBG_08665CRIB domain-containing protein. (787 aa)
TIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (246 aa)
VDBG_08747CBP3. (354 aa)
VDBG_08803Elicitor protein. (324 aa)
VDBG_08891Coronin; Belongs to the WD repeat coronin family. (616 aa)
VDBG_08920NAD dependent epimerase/dehydratase family protein. (296 aa)
VDBG_08951Nuclear distribution protein nudF. (391 aa)
VDBG_09650Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2442 aa)
VDBG_09661Actin; Belongs to the actin family. (452 aa)
VDBG_09345WD repeat-containing protein srw1. (587 aa)
VDBG_09701SGT1-like protein. (638 aa)
VDBG_09716LDB17. (489 aa)
VDBG_09759Eukaryotic translation initiation factor 2A. (478 aa)
VDBG_03098Predicted protein. (137 aa)
VDBG_03099Predicted protein. (182 aa)
VDBG_02516ADF-H domain-containing protein. (199 aa)
VDBG_03264Suaprga1. (307 aa)
VDBG_02577Nucleotide excision repair protein RAD23. (394 aa)
VDBG_02589Uncharacterized protein. (1399 aa)
VDBG_02647Uncharacterized protein. (1399 aa)
VDBG_02750Uncharacterized protein. (299 aa)
VDBG_03865Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (238 aa)
VDBG_04006Meiosis-specific APC/C activator protein AMA1. (608 aa)
VDBG_04019Uncharacterized protein. (348 aa)
VDBG_04056L-amino acid oxidase. (597 aa)
VDBG_03488AN1-type zinc finger protein. (314 aa)
VDBG_03528H15 domain-containing protein. (208 aa)
VDBG_03532PaxU. (128 aa)
VDBG_04196Actin lateral binding protein. (161 aa)
VDBG_04208WD repeat-containing protein. (707 aa)
VDBG_03617L-amino acid oxidase. (614 aa)
VDBG_04293ISWI chromatin-remodeling complex ATPase ISW2. (132 aa)
VDBG_03678Ribosome biogenesis ATPase RIX7; Belongs to the AAA ATPase family. (507 aa)
VDBG_04294WD repeat-containing protein. (610 aa)
GUF1Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (620 aa)
VDBG_04321Uncharacterized protein. (89 aa)
VDBG_03732Uncharacterized protein. (266 aa)
VDBG_03758Uncharacterized protein. (289 aa)
VDBG_03768Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures. (91 aa)
VDBG_03784RasGAP-like protein. (1694 aa)
VDBG_03815Mitochondrial distribution and morphology protein. (482 aa)
VDBG_04568Eukaryotic ribosome biogenesis protein. (456 aa)
VDBG_04721Arp2/3 complex 34 kDa subunit; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. (319 aa)
VDBG_04830Uncharacterized protein. (570 aa)
VDBG_04861AbpA. (817 aa)
VDBG_05009Antigen 1. (297 aa)
VDBG_04353Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (151 aa)
VDBG_04398Guanine nucleotide-binding protein alpha-3 subunit. (355 aa)
VDBG_05802Gelsolin repeat-containing protein. (380 aa)
VDBG_05815Ima1_N domain-containing protein. (680 aa)
VDBG_05087Ankyrin repeat-containing protein. (238 aa)
VDBG_05368RNA-binding protein rsd1. (227 aa)
VDBG_05454Ubiquitin/metalloprotease fusion protein. (356 aa)
VDBG_05564Actin-2; Belongs to the actin family. (439 aa)
VDBG_05573Cupin domain-containing protein. (653 aa)
VDBG_05879Uncharacterized protein. (48 aa)
VDBG_05880Golgi reassembly stacking protein. (210 aa)
VDBG_05970TUG-UBL1 domain-containing protein. (513 aa)
VDBG_06021Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks; Belongs to the WD repeat ARPC1 family. (363 aa)
VDBG_06161Translation initiation factor SUI1. (153 aa)
VDBG_06384C6 zinc finger domain-containing protein. (648 aa)
VDBG_06448Class II Aldolase family protein. (300 aa)
VDBG_06486COG2 domain-containing protein. (255 aa)
VDBG_06543Transport protein SEC61 subunit alpha. (308 aa)
VDBG_06672Calponin. (721 aa)
VDBG_06673NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (197 aa)
VDBG_06877Uncharacterized protein. (55 aa)
VDBG_06937Translation initiation factor 4B. (395 aa)
VDBG_06938Elongation factor 2. (1001 aa)
VDBG_07039Plastin-2. (571 aa)
VDBG_07046G-protein beta subunit. (316 aa)
VDBG_07051Translational activator GCN1. (2680 aa)
VDBG_07070Mitotic spindle checkpoint component mad2. (221 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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