(4 nodes) Double-strand break repair via synthesis-dependent strand annealing network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_04420	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (355 aa)
	VDBG_00651	DNA repair and recombination protein rad22. (339 aa)
	VDBG_00972	Uncharacterized protein. (392 aa)
	VDBG_05514	DNA repair protein RAD57. (459 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00651	VDBG_00972	C9S6Q2	C9S7X8	DNA repair and recombination protein rad22.	Uncharacterized protein.	0.876
VDBG_00651	VDBG_04420	C9S6Q2	C9SJE9	DNA repair and recombination protein rad22.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.995
VDBG_00651	VDBG_05514	C9S6Q2	C9SL37	DNA repair and recombination protein rad22.	DNA repair protein RAD57.	0.876
VDBG_00972	VDBG_00651	C9S7X8	C9S6Q2	Uncharacterized protein.	DNA repair and recombination protein rad22.	0.876
VDBG_00972	VDBG_04420	C9S7X8	C9SJE9	Uncharacterized protein.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.995
VDBG_00972	VDBG_05514	C9S7X8	C9SL37	Uncharacterized protein.	DNA repair protein RAD57.	0.995
VDBG_04420	VDBG_00651	C9SJE9	C9S6Q2	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	DNA repair and recombination protein rad22.	0.995
VDBG_04420	VDBG_00972	C9SJE9	C9S7X8	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	Uncharacterized protein.	0.995
VDBG_04420	VDBG_05514	C9SJE9	C9SL37	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	DNA repair protein RAD57.	0.981
VDBG_05514	VDBG_00651	C9SL37	C9S6Q2	DNA repair protein RAD57.	DNA repair and recombination protein rad22.	0.876
VDBG_05514	VDBG_00972	C9SL37	C9S7X8	DNA repair protein RAD57.	Uncharacterized protein.	0.995
VDBG_05514	VDBG_04420	C9SL37	C9SJE9	DNA repair protein RAD57.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.981