STRINGSTRING
VDBG_00428 VDBG_00428 VDBG_10004 VDBG_10004 VDBG_05660 VDBG_05660 VDBG_04420 VDBG_04420 VDBG_04584 VDBG_04584 VDBG_03797 VDBG_03797 VDBG_04109 VDBG_04109 VDBG_03965 VDBG_03965 VDBG_03408 VDBG_03408 VDBG_03087 VDBG_03087 VDBG_01921 VDBG_01921 VDBG_01920 VDBG_01920 VDBG_01491 VDBG_01491 VDBG_00052 VDBG_00052 VDBG_00759 VDBG_00759
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00428MRC1 domain-containing protein. (1303 aa)
VDBG_10004C2H2-type domain-containing protein. (363 aa)
VDBG_05660ERCC4 domain-containing protein. (712 aa)
VDBG_04420DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (355 aa)
VDBG_04584Forkhead-associated domain-containing protein kinase. (593 aa)
VDBG_03797Chromatin assembly factor 1 subunit B. (693 aa)
VDBG_04109Uncharacterized protein. (40 aa)
VDBG_03965DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1193 aa)
VDBG_03408Uncharacterized protein. (2054 aa)
VDBG_03087DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2076 aa)
VDBG_01921Chromosome segregation in meiosis protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (105 aa)
VDBG_01920Predicted protein. (110 aa)
VDBG_01491Uncharacterized protein. (833 aa)
VDBG_00052DNA polymerase. (1055 aa)
VDBG_00759Thermotolerance protein. (1315 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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