5 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_07215	Mitochondrial import inner membrane translocase subunit TIM10. (93 aa)
	VDBG_00251	Mitochondrial import inner membrane translocase subunit tim-22. (176 aa)
	VDBG_00665	Mitochondrial proteins import receptor. (622 aa)
	VDBG_02230	Uncharacterized protein. (115 aa)
	VDBG_06365	Mitochondrial import inner membrane translocase subunit tim-54. (496 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00251	VDBG_00665	C9S544	C9S6U6	Mitochondrial import inner membrane translocase subunit tim-22.	Mitochondrial proteins import receptor.	0.448
VDBG_00251	VDBG_06365	C9S544	C9SN90	Mitochondrial import inner membrane translocase subunit tim-22.	Mitochondrial import inner membrane translocase subunit tim-54.	0.963
VDBG_00251	VDBG_07215	C9S544	C9SQI0	Mitochondrial import inner membrane translocase subunit tim-22.	Mitochondrial import inner membrane translocase subunit TIM10.	0.995
VDBG_00665	VDBG_00251	C9S6U6	C9S544	Mitochondrial proteins import receptor.	Mitochondrial import inner membrane translocase subunit tim-22.	0.448
VDBG_00665	VDBG_02230	C9S6U6	C9S9Q8	Mitochondrial proteins import receptor.	Uncharacterized protein.	0.482
VDBG_00665	VDBG_06365	C9S6U6	C9SN90	Mitochondrial proteins import receptor.	Mitochondrial import inner membrane translocase subunit tim-54.	0.513
VDBG_00665	VDBG_07215	C9S6U6	C9SQI0	Mitochondrial proteins import receptor.	Mitochondrial import inner membrane translocase subunit TIM10.	0.633
VDBG_02230	VDBG_00665	C9S9Q8	C9S6U6	Uncharacterized protein.	Mitochondrial proteins import receptor.	0.482
VDBG_02230	VDBG_07215	C9S9Q8	C9SQI0	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit TIM10.	0.562
VDBG_06365	VDBG_00251	C9SN90	C9S544	Mitochondrial import inner membrane translocase subunit tim-54.	Mitochondrial import inner membrane translocase subunit tim-22.	0.963
VDBG_06365	VDBG_00665	C9SN90	C9S6U6	Mitochondrial import inner membrane translocase subunit tim-54.	Mitochondrial proteins import receptor.	0.513
VDBG_06365	VDBG_07215	C9SN90	C9SQI0	Mitochondrial import inner membrane translocase subunit tim-54.	Mitochondrial import inner membrane translocase subunit TIM10.	0.958
VDBG_07215	VDBG_00251	C9SQI0	C9S544	Mitochondrial import inner membrane translocase subunit TIM10.	Mitochondrial import inner membrane translocase subunit tim-22.	0.995
VDBG_07215	VDBG_00665	C9SQI0	C9S6U6	Mitochondrial import inner membrane translocase subunit TIM10.	Mitochondrial proteins import receptor.	0.633
VDBG_07215	VDBG_02230	C9SQI0	C9S9Q8	Mitochondrial import inner membrane translocase subunit TIM10.	Uncharacterized protein.	0.562
VDBG_07215	VDBG_06365	C9SQI0	C9SN90	Mitochondrial import inner membrane translocase subunit TIM10.	Mitochondrial import inner membrane translocase subunit tim-54.	0.958