STRINGSTRING
VDBG_07803 VDBG_07803 VDBG_17008 VDBG_17008 VDBG_01988 VDBG_01988 VDBG_03405 VDBG_03405 VDBG_03453 VDBG_03453 VDBG_04168 VDBG_04168 VDBG_05819 VDBG_05819 VDBG_07057 VDBG_07057 VDBG_07802 VDBG_07802
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_07803Predicted protein. (523 aa)
VDBG_17008Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (374 aa)
VDBG_01988Cytochrome c oxidase subunit VIa; Belongs to the cytochrome c oxidase subunit 6A family. (133 aa)
VDBG_03405Cytochrome c oxidase polypeptide V. (168 aa)
VDBG_03453Uncharacterized protein. (142 aa)
VDBG_04168Cytochrome c oxidase polypeptide VI. (160 aa)
VDBG_05819Uncharacterized protein. (81 aa)
VDBG_07057Uncharacterized protein. (292 aa)
VDBG_07802Cytochrome c oxidase polypeptide IV. (194 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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