(6 nodes) Regulation of RNA polymerase II transcription preinitiation complex assembly network (Verticillium alfalfae)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_03629	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family. (421 aa)
	VDBG_05506	Proteasome 19S regulatory particle. (93 aa)
	VDBG_08898	TATA-binding protein-associated factor MOT1. (1876 aa)
	VDBG_02216	TATA-binding protein-associated phosphoprotein. (138 aa)
	VDBG_01411	26S protease regulatory subunit 6A-B. (231 aa)
	VDBG_04729	26S protease regulatory subunit S10B; Belongs to the AAA ATPase family. (361 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_01411	VDBG_03629	C9S812	C9SGK3	26S protease regulatory subunit 6A-B.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.999
VDBG_01411	VDBG_04729	C9S812	C9SI47	26S protease regulatory subunit 6A-B.	26S protease regulatory subunit S10B; Belongs to the AAA ATPase family.	0.999
VDBG_01411	VDBG_05506	C9S812	C9SL29	26S protease regulatory subunit 6A-B.	Proteasome 19S regulatory particle.	0.999
VDBG_02216	VDBG_08898	C9S9P4	C9SVH3	TATA-binding protein-associated phosphoprotein.	TATA-binding protein-associated factor MOT1.	0.883
VDBG_03629	VDBG_01411	C9SGK3	C9S812	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6A-B.	0.999
VDBG_03629	VDBG_04729	C9SGK3	C9SI47	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S protease regulatory subunit S10B; Belongs to the AAA ATPase family.	0.999
VDBG_03629	VDBG_05506	C9SGK3	C9SL29	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	Proteasome 19S regulatory particle.	0.999
VDBG_04729	VDBG_01411	C9SI47	C9S812	26S protease regulatory subunit S10B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6A-B.	0.999
VDBG_04729	VDBG_03629	C9SI47	C9SGK3	26S protease regulatory subunit S10B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.999
VDBG_04729	VDBG_05506	C9SI47	C9SL29	26S protease regulatory subunit S10B; Belongs to the AAA ATPase family.	Proteasome 19S regulatory particle.	0.999
VDBG_05506	VDBG_01411	C9SL29	C9S812	Proteasome 19S regulatory particle.	26S protease regulatory subunit 6A-B.	0.999
VDBG_05506	VDBG_03629	C9SL29	C9SGK3	Proteasome 19S regulatory particle.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.999
VDBG_05506	VDBG_04729	C9SL29	C9SI47	Proteasome 19S regulatory particle.	26S protease regulatory subunit S10B; Belongs to the AAA ATPase family.	0.999
VDBG_08898	VDBG_02216	C9SVH3	C9S9P4	TATA-binding protein-associated factor MOT1.	TATA-binding protein-associated phosphoprotein.	0.883