STRINGSTRING
VDBG_00012 VDBG_00012 VDBG_09942 VDBG_09942 VDBG_07220 VDBG_07220 VDBG_01661 VDBG_01661 VDBG_00731 VDBG_00731 VDBG_04772 VDBG_04772 VDBG_04552 VDBG_04552 VDBG_00730 VDBG_00730 VDBG_07368 VDBG_07368
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00012Inosine triphosphate pyrophosphatase. (158 aa)
VDBG_09942Nudix domain containing protein; Belongs to the Nudix hydrolase family. (150 aa)
VDBG_07220Predicted protein. (133 aa)
VDBG_01661Ectonucleotide pyrophosphatase/phosphodiesterase family member 3. (751 aa)
VDBG_00731Predicted protein. (178 aa)
VDBG_04772Deoxyuridine 5'-triphosphate nucleotidohydrolase. (165 aa)
VDBG_04552NUDIX domain-containing protein. (331 aa)
VDBG_00730Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (221 aa)
VDBG_07368Septum formation protein Maf. (224 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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