(25 nodes) Regulation of small molecule metabolic process network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_09558	Zn(2)-C6 fungal-type domain-containing protein. (659 aa)
	VDBG_00298	Ran-binding protein. (477 aa)
	VDBG_00464	E3 ubiquitin-protein ligase. (791 aa)
	VDBG_01402	Transcriptional activator protein DAL81. (633 aa)
	VDBG_01418	Uncharacterized protein. (296 aa)
	VDBG_01534	Serine/threonine-protein phosphatase. (347 aa)
	VDBG_01707	Uncharacterized protein. (412 aa)
	VDBG_01823	Uncharacterized protein. (246 aa)
	VDBG_03066	Zn(2)-C6 fungal-type domain-containing protein. (593 aa)
	VDBG_04053	WD repeat-containing protein. (628 aa)
	VDBG_04896	Protein phosphatase; Belongs to the PP2C family. (344 aa)
	VDBG_05272	Transcription factor TamA. (532 aa)
	VDBG_05287	Protein-serine/threonine kinase. (467 aa)
	VDBG_05347	Epoxide hydrolase. (352 aa)
	VDBG_06096	Citrate lyase subunit beta. (253 aa)
	VDBG_06843	Uncharacterized protein. (406 aa)
	VDBG_07122	Armadillo repeat protein. (1031 aa)
	VDBG_07212	Uncharacterized protein. (494 aa)
	VDBG_08090	Chap1. (451 aa)
	VDBG_08151	Transcriptional activator protein DAL81. (680 aa)
	VDBG_08163	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (188 aa)
	VDBG_08340	Uncharacterized protein. (252 aa)
	VDBG_08729	Fyv-10. (460 aa)
	VDBG_09324	UDP-N-acetylglucosaminyltransferase. (1133 aa)
	VDBG_09325	UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase. (234 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00298	VDBG_01418	C9S591	C9S859	Ran-binding protein.	Uncharacterized protein.	0.974
VDBG_00298	VDBG_04053	C9S591	C9SFF8	Ran-binding protein.	WD repeat-containing protein.	0.994
VDBG_00298	VDBG_07212	C9S591	C9SQH7	Ran-binding protein.	Uncharacterized protein.	0.950
VDBG_00298	VDBG_08163	C9S591	C9STD8	Ran-binding protein.	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.618
VDBG_00298	VDBG_08340	C9S591	C9STR9	Ran-binding protein.	Uncharacterized protein.	0.995
VDBG_00298	VDBG_08729	C9S591	C9SV04	Ran-binding protein.	Fyv-10.	0.953
VDBG_01418	VDBG_00298	C9S859	C9S591	Uncharacterized protein.	Ran-binding protein.	0.974
VDBG_01418	VDBG_04053	C9S859	C9SFF8	Uncharacterized protein.	WD repeat-containing protein.	0.798
VDBG_01418	VDBG_07212	C9S859	C9SQH7	Uncharacterized protein.	Uncharacterized protein.	0.806
VDBG_01418	VDBG_08340	C9S859	C9STR9	Uncharacterized protein.	Uncharacterized protein.	0.951
VDBG_01418	VDBG_08729	C9S859	C9SV04	Uncharacterized protein.	Fyv-10.	0.766
VDBG_04053	VDBG_00298	C9SFF8	C9S591	WD repeat-containing protein.	Ran-binding protein.	0.994
VDBG_04053	VDBG_01418	C9SFF8	C9S859	WD repeat-containing protein.	Uncharacterized protein.	0.798
VDBG_04053	VDBG_07212	C9SFF8	C9SQH7	WD repeat-containing protein.	Uncharacterized protein.	0.944
VDBG_04053	VDBG_08163	C9SFF8	C9STD8	WD repeat-containing protein.	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.626
VDBG_04053	VDBG_08340	C9SFF8	C9STR9	WD repeat-containing protein.	Uncharacterized protein.	0.979
VDBG_04053	VDBG_08729	C9SFF8	C9SV04	WD repeat-containing protein.	Fyv-10.	0.777
VDBG_07212	VDBG_00298	C9SQH7	C9S591	Uncharacterized protein.	Ran-binding protein.	0.950
VDBG_07212	VDBG_01418	C9SQH7	C9S859	Uncharacterized protein.	Uncharacterized protein.	0.806
VDBG_07212	VDBG_04053	C9SQH7	C9SFF8	Uncharacterized protein.	WD repeat-containing protein.	0.944