(11 nodes) Nuclear-transcribed mRNA catabolic process, non-stop decay network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_05543	Meiotic recombination protein rec14. (310 aa)
	VDBG_03680	RNase_PH domain-containing protein. (373 aa)
	VDBG_03647	Superkiller protein. (1415 aa)
	VDBG_04141	Sec2p domain-containing protein. (324 aa)
	VDBG_07792	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (398 aa)
	VDBG_01916	Antiviral helicase SKI2. (1242 aa)
	VDBG_02195	Exosome complex exonuclease RRP43. (340 aa)
	VDBG_09932	Exosome complex exonuclease RRP41. (155 aa)
	VDBG_04140	3'-5' exoribonuclease CSL4. (211 aa)
	VDBG_06740	Exosome complex exonuclease RRP45. (271 aa)
	VDBG_05847	RNase_PH domain-containing protein. (249 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_01916	VDBG_02195	C9SBS3	C9S9M3	Antiviral helicase SKI2.	Exosome complex exonuclease RRP43.	0.958
VDBG_01916	VDBG_03647	C9SBS3	C9SGP3	Antiviral helicase SKI2.	Superkiller protein.	0.999
VDBG_01916	VDBG_03680	C9SBS3	C9SGU9	Antiviral helicase SKI2.	RNase_PH domain-containing protein.	0.971
VDBG_01916	VDBG_04140	C9SBS3	C9SFT6	Antiviral helicase SKI2.	3'-5' exoribonuclease CSL4.	0.856
VDBG_01916	VDBG_04141	C9SBS3	C9SFT7	Antiviral helicase SKI2.	Sec2p domain-containing protein.	0.856
VDBG_01916	VDBG_05543	C9SBS3	C9SL66	Antiviral helicase SKI2.	Meiotic recombination protein rec14.	0.999
VDBG_01916	VDBG_05847	C9SBS3	C9SLS3	Antiviral helicase SKI2.	RNase_PH domain-containing protein.	0.954
VDBG_01916	VDBG_06740	C9SBS3	C9SPB5	Antiviral helicase SKI2.	Exosome complex exonuclease RRP45.	0.968
VDBG_01916	VDBG_07792	C9SBS3	C9SSB7	Antiviral helicase SKI2.	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.	0.664
VDBG_01916	VDBG_09932	C9SBS3	C9SYF7	Antiviral helicase SKI2.	Exosome complex exonuclease RRP41.	0.948
VDBG_02195	VDBG_01916	C9S9M3	C9SBS3	Exosome complex exonuclease RRP43.	Antiviral helicase SKI2.	0.958
VDBG_02195	VDBG_03647	C9S9M3	C9SGP3	Exosome complex exonuclease RRP43.	Superkiller protein.	0.883
VDBG_02195	VDBG_03680	C9S9M3	C9SGU9	Exosome complex exonuclease RRP43.	RNase_PH domain-containing protein.	0.999
VDBG_02195	VDBG_04140	C9S9M3	C9SFT6	Exosome complex exonuclease RRP43.	3'-5' exoribonuclease CSL4.	0.982
VDBG_02195	VDBG_04141	C9S9M3	C9SFT7	Exosome complex exonuclease RRP43.	Sec2p domain-containing protein.	0.974
VDBG_02195	VDBG_05543	C9S9M3	C9SL66	Exosome complex exonuclease RRP43.	Meiotic recombination protein rec14.	0.807
VDBG_02195	VDBG_05847	C9S9M3	C9SLS3	Exosome complex exonuclease RRP43.	RNase_PH domain-containing protein.	0.999
VDBG_02195	VDBG_06740	C9S9M3	C9SPB5	Exosome complex exonuclease RRP43.	Exosome complex exonuclease RRP45.	0.999
VDBG_02195	VDBG_09932	C9S9M3	C9SYF7	Exosome complex exonuclease RRP43.	Exosome complex exonuclease RRP41.	0.999
VDBG_03647	VDBG_01916	C9SGP3	C9SBS3	Superkiller protein.	Antiviral helicase SKI2.	0.999