(10 nodes) Error-free translesion synthesis network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_04619	DNA polymerase IV. (563 aa)
	VDBG_00361	Uncharacterized protein. (75 aa)
	VDBG_01969	DNA polymerase IV. (631 aa)
	VDBG_01980	DNA polymerase. (1611 aa)
	VDBG_03484	MUS26. (299 aa)
	VDBG_04618	MUS42. (171 aa)
	VDBG_04775	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (239 aa)
	VDBG_04776	Vezatin domain-containing protein. (505 aa)
	VDBG_04353	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (151 aa)
	VDBG_07332	DNA polymerase kappa. (407 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00361	VDBG_01969	C9S5M8	C9SBX6	Uncharacterized protein.	DNA polymerase IV.	0.944
VDBG_00361	VDBG_01980	C9S5M8	C9SBY7	Uncharacterized protein.	DNA polymerase.	0.902
VDBG_00361	VDBG_03484	C9S5M8	C9SFX1	Uncharacterized protein.	MUS26.	0.906
VDBG_00361	VDBG_04775	C9S5M8	C9SI93	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.740
VDBG_00361	VDBG_04776	C9S5M8	C9SI94	Uncharacterized protein.	Vezatin domain-containing protein.	0.740
VDBG_00361	VDBG_07332	C9S5M8	C9SQU7	Uncharacterized protein.	DNA polymerase kappa.	0.866
VDBG_01969	VDBG_00361	C9SBX6	C9S5M8	DNA polymerase IV.	Uncharacterized protein.	0.944
VDBG_01969	VDBG_01980	C9SBX6	C9SBY7	DNA polymerase IV.	DNA polymerase.	0.967
VDBG_01969	VDBG_03484	C9SBX6	C9SFX1	DNA polymerase IV.	MUS26.	0.968
VDBG_01969	VDBG_04353	C9SBX6	C9SJ82	DNA polymerase IV.	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.588
VDBG_01969	VDBG_04618	C9SBX6	C9SHT6	DNA polymerase IV.	MUS42.	0.944
VDBG_01969	VDBG_04619	C9SBX6	C9SHT7	DNA polymerase IV.	DNA polymerase IV.	0.953
VDBG_01969	VDBG_04775	C9SBX6	C9SI93	DNA polymerase IV.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.999
VDBG_01969	VDBG_04776	C9SBX6	C9SI94	DNA polymerase IV.	Vezatin domain-containing protein.	0.999
VDBG_01969	VDBG_07332	C9SBX6	C9SQU7	DNA polymerase IV.	DNA polymerase kappa.	0.832
VDBG_01980	VDBG_00361	C9SBY7	C9S5M8	DNA polymerase.	Uncharacterized protein.	0.902
VDBG_01980	VDBG_01969	C9SBY7	C9SBX6	DNA polymerase.	DNA polymerase IV.	0.967
VDBG_01980	VDBG_03484	C9SBY7	C9SFX1	DNA polymerase.	MUS26.	0.999
VDBG_01980	VDBG_04353	C9SBY7	C9SJ82	DNA polymerase.	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.702
VDBG_01980	VDBG_04618	C9SBY7	C9SHT6	DNA polymerase.	MUS42.	0.933