(67 nodes) RNA phosphodiester bond hydrolysis, endonucleolytic network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_06745	Ribosome biogenesis protein Kri1. (666 aa)
	VDBG_07297	Translin associated factor X. (256 aa)
	VDBG_06953	rRNA-processing protein FCF2. (225 aa)
	VDBG_07643	tRNA-splicing endonuclease subunit Sen2. (555 aa)
	VDBG_07850	Guanyl-specific ribonuclease F1. (126 aa)
	VDBG_08034	Eukaryotic translation initiation factor 2C 3. (928 aa)
	VDBG_08041	Small nucleolar ribonucleoprotein complex subunit Utp14. (919 aa)
	VDBG_08149	Uncharacterized protein. (428 aa)
	VDBG_08371	Ribonuclease P protein subunit. (240 aa)
	VDBG_08498	Uncharacterized protein. (391 aa)
	VDBG_08238	Rpp14 family protein. (199 aa)
	VDBG_08788	Mitochondrial nuclease. (419 aa)
	VDBG_08825	Uncharacterized protein. (237 aa)
	VDBG_08975	Uncharacterized protein. (215 aa)
	VDBG_09158	Protein kinase domain-containing protein. (253 aa)
	VDBG_09213	RNase Z. (329 aa)
	VDBG_09401	Ribonuclease T2; Belongs to the RNase T2 family. (299 aa)
	VDBG_09952	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (87 aa)
	VDBG_10157	Uncharacterized protein. (140 aa)
	VDBG_10200	rRNA biogenesis protein RRP5. (1789 aa)
	VDBG_07781	Predicted protein. (153 aa)
	VDBG_01121	54S ribosomal protein L3. (413 aa)
	VDBG_00498	Guanyl-specific ribonuclease F1. (202 aa)
	VDBG_01603	Ribosome biogenesis protein TSR1. (636 aa)
	VDBG_02495	Serine/threonine-protein kinase/endoribonuclease IRE1. (1226 aa)
	VDBG_01771	Uncharacterized protein. (163 aa)
	VDBG_01811	EST1_DNA_bind domain-containing protein. (734 aa)
	VDBG_01067	Bystin. (319 aa)
	VDBG_04694	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (198 aa)
	VDBG_04709	Nucleolar complex protein. (546 aa)
	VDBG_04722	DOM34-interacting protein. (977 aa)
	VDBG_04369	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (319 aa)
	VDBG_05217	Ribonuclease Trv; Belongs to the RNase T2 family. (412 aa)
	VDBG_05221	Ribonuclease. (426 aa)
	VDBG_05294	Uncharacterized protein. (1240 aa)
	VDBG_05298	Uncharacterized protein. (459 aa)
	VDBG_05443	Nucleolar protein NOP58. (598 aa)
	VDBG_05572	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (264 aa)
	VDBG_06028	Uncharacterized protein. (87 aa)
	VDBG_06428	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (452 aa)
	VDBG_06441	RNase III domain-containing protein. (279 aa)
	VDBG_01416	Uncharacterized protein. (298 aa)
	VDBG_00862	RNase3 domain-containing protein; Belongs to the helicase family. Dicer subfamily. (1510 aa)
	VDBG_00772	Ribosome biogenesis protein BMS1. (1149 aa)
	VDBG_03310	Predicted protein. (221 aa)
	VDBG_03311	Predicted protein. (109 aa)
	VDBG_02631	Lactamase_B_4 domain-containing protein. (673 aa)
	VDBG_03988	Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (328 aa)
	VDBG_00697	Ribonucleases P/MRP protein subunit. (569 aa)
	VDBG_04107	U3 small nucleolar RNA-associated protein. (906 aa)
	VDBG_04146	rRNA-processing protein FCF1. (200 aa)
	VDBG_04153	Ribosomal RNA-processing protein. (529 aa)
	VDBG_04217	Uncharacterized protein. (291 aa)
	VDBG_04218	Uncharacterized protein. (223 aa)
	VDBG_03564	Argonaute. (960 aa)
	VDBG_04244	Periodic tryptophan protein. (160 aa)
	VDBG_03654	Ribosome biogenesis protein BRX1. (297 aa)
	VDBG_03655	Uncharacterized protein. (228 aa)
	VDBG_03727	Uncharacterized protein. (256 aa)
	VDBG_03769	Multiple RNA-binding domain-containing protein. (157 aa)
	VDBG_04636	RNA-3'-phosphate cyclase family protein. (368 aa)
	VDBG_00173	Uncharacterized protein. (592 aa)
	VDBG_02269	Uncharacterized protein. (176 aa)
	VDBG_02389	Bud site selection protein. (264 aa)
	VDBG_02413	Pectate lyase. (337 aa)
	VDBG_01546	Lariat debranching enzyme. (556 aa)
	VDBG_01602	WD repeat-containing protein. (399 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00173	VDBG_00772	C9S918	C9S779	Uncharacterized protein.	Ribosome biogenesis protein BMS1.	0.544
VDBG_00173	VDBG_01067	C9S918	C9S8Y5	Uncharacterized protein.	Bystin.	0.636
VDBG_00173	VDBG_01602	C9S918	C9SAP5	Uncharacterized protein.	WD repeat-containing protein.	0.592
VDBG_00173	VDBG_01603	C9S918	C9SAS0	Uncharacterized protein.	Ribosome biogenesis protein TSR1.	0.585
VDBG_00173	VDBG_03769	C9S918	C9SH66	Uncharacterized protein.	Multiple RNA-binding domain-containing protein.	0.482
VDBG_00173	VDBG_04107	C9S918	C9SFQ3	Uncharacterized protein.	U3 small nucleolar RNA-associated protein.	0.599
VDBG_00173	VDBG_04146	C9S918	C9SFU2	Uncharacterized protein.	rRNA-processing protein FCF1.	0.503
VDBG_00173	VDBG_04153	C9S918	C9SFU9	Uncharacterized protein.	Ribosomal RNA-processing protein.	0.448
VDBG_00173	VDBG_04244	C9S918	C9SGI5	Uncharacterized protein.	Periodic tryptophan protein.	0.495
VDBG_00173	VDBG_04369	C9S918	C9SJ98	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.618
VDBG_00173	VDBG_04636	C9S918	C9SHV4	Uncharacterized protein.	RNA-3'-phosphate cyclase family protein.	0.580
VDBG_00173	VDBG_04694	C9S918	C9SI12	Uncharacterized protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.708
VDBG_00173	VDBG_04709	C9S918	C9SI27	Uncharacterized protein.	Nucleolar complex protein.	0.599
VDBG_00173	VDBG_04722	C9S918	C9SI40	Uncharacterized protein.	DOM34-interacting protein.	0.584
VDBG_00173	VDBG_05443	C9S918	C9SKW6	Uncharacterized protein.	Nucleolar protein NOP58.	0.697
VDBG_00173	VDBG_06428	C9S918	C9SNF3	Uncharacterized protein.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.594
VDBG_00173	VDBG_06953	C9S918	C9SR41	Uncharacterized protein.	rRNA-processing protein FCF2.	0.586
VDBG_00173	VDBG_08041	C9S918	C9ST16	Uncharacterized protein.	Small nucleolar ribonucleoprotein complex subunit Utp14.	0.467
VDBG_00173	VDBG_10200	C9S918	C9SZ75	Uncharacterized protein.	rRNA biogenesis protein RRP5.	0.801
VDBG_00697	VDBG_01416	C9S6X8	C9S857	Ribonucleases P/MRP protein subunit.	Uncharacterized protein.	0.971