(136 nodes) Ribosomal subunit network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00290	60S ribosomal protein L10. (222 aa)
	VDBG_00291	60S ribosomal protein L30-1. (110 aa)
	VDBG_01121	54S ribosomal protein L3. (413 aa)
	VDBG_01125	S4 RNA-binding domain-containing protein. (470 aa)
	VDBG_01127	Predicted protein. (192 aa)
	VDBG_01156	Uncharacterized protein. (176 aa)
	VDBG_00448	40S ribosomal protein S19. (152 aa)
	VDBG_00484	Uncharacterized protein. (202 aa)
	VDBG_00570	60S ribosomal protein L22. (126 aa)
	VDBG_00573	Uncharacterized protein. (226 aa)
	VDBG_00734	ADP-ribosylation factor GTPase-activating protein GCS1. (409 aa)
	VDBG_00806	40S ribosomal protein S28. (68 aa)
	VDBG_00898	Uncharacterized protein. (186 aa)
	VDBG_01374	Uncharacterized protein. (171 aa)
	VDBG_00915	54S ribosomal protein L19; Belongs to the universal ribosomal protein uL11 family. (152 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (247 aa)
	VDBG_00064	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (336 aa)
	VDBG_00156	54S ribosomal protein L7. (356 aa)
	VDBG_00186	Nucleolar GTP-binding protein. (643 aa)
	VDBG_04760	Homoserine acetyltransferase family protein. (306 aa)
	VDBG_04774	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (64 aa)
	VDBG_04817	60S ribosomal protein L35. (125 aa)
	VDBG_04824	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (202 aa)
	VDBG_04917	Mitoc_mL59 domain-containing protein. (166 aa)
	VDBG_04948	60S ribosomal protein L33-A. (109 aa)
	VDBG_05021	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (172 aa)
	VDBG_04377	50S ribosomal protein L4. (254 aa)
	VDBG_04423	60S ribosomal protein L9-A. (193 aa)
	VDBG_04448	Protein phosphatase methylesterase. (57 aa)
	VDBG_04449	Protein phosphatase methylesterase. (296 aa)
	VDBG_05817	37S ribosomal protein Rsm25. (278 aa)
	VDBG_05109	54S ribosomal protein RML2. (392 aa)
	VDBG_05222	Uncharacterized protein. (104 aa)
	VDBG_05246	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (421 aa)
	VDBG_05257	40S ribosomal protein S6. (142 aa)
	VDBG_05268	KOW motif domain-containing protein. (346 aa)
	VDBG_05320	Ribosomal_L30 domain-containing protein; Belongs to the universal ribosomal protein uL30 family. (114 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (288 aa)
	VDBG_05441	Uncharacterized protein. (237 aa)
	VDBG_05447	Mitochondrial ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (110 aa)
	VDBG_05520	Uncharacterized protein. (132 aa)
	VDBG_05575	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (207 aa)
	VDBG_05576	Predicted protein. (560 aa)
	VDBG_05591	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (93 aa)
	VDBG_05592	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (123 aa)
	VDBG_05969	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (106 aa)
	VDBG_06125	60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (110 aa)
	VDBG_06127	Uncharacterized protein. (210 aa)
	VDBG_06157	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (155 aa)
	VDBG_06305	Uncharacterized protein. (89 aa)
	VDBG_06441	RNase III domain-containing protein. (279 aa)
	VDBG_06610	60S ribosomal protein L34. (116 aa)
	VDBG_06627	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	VDBG_06640	54S ribosomal protein L23. (129 aa)
	VDBG_06646	60S ribosomal protein L32. (131 aa)
	VDBG_06725	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	VDBG_06728	60S ribosomal protein L39. (51 aa)
	VDBG_06761	Uncharacterized protein. (271 aa)
	VDBG_06829	Mitochondrial 54S ribosomal protein L51. (137 aa)
	VDBG_06880	60S ribosomal protein L2. (254 aa)
	VDBG_06907	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	VDBG_07042	60S ribosomal protein L18. (183 aa)
	VDBG_07050	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (193 aa)
	VDBG_07055	Mitochondrial large ribosomal subunit; Belongs to the universal ribosomal protein uL22 family. (338 aa)
	VDBG_07125	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (203 aa)
	VDBG_07341	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (258 aa)
	VDBG_06954	30S ribosomal protein S10. (200 aa)
	VDBG_07522	54S ribosomal protein L35. (469 aa)
	VDBG_07523	54S ribosomal protein YmL6. (303 aa)
	VDBG_07734	Uncharacterized protein. (157 aa)
	VDBG_07810	50S ribosomal protein L15. (325 aa)
	VDBG_07900	Uncharacterized protein. (367 aa)
	VDBG_08094	Uncharacterized protein. (96 aa)
	VDBG_08130	Ribosomal_S7 domain-containing protein. (302 aa)
	VDBG_08180	54S ribosomal protein L6. (241 aa)
	VDBG_08212	CIA30 family protein. (233 aa)
	VDBG_08213	Uncharacterized protein. (98 aa)
	VDBG_08252	40S ribosomal protein S17. (148 aa)
	VDBG_08644	60S ribosomal protein L23a. (157 aa)
	VDBG_08653	60S ribosomal protein L28. (158 aa)
	VDBG_08901	50S ribosomal subunit L30. (343 aa)
	VDBG_08940	60S ribosomal protein L43. (92 aa)
	VDBG_08942	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (145 aa)
	VDBG_08943	40S ribosomal protein S22; Belongs to the universal ribosomal protein uS8 family. (94 aa)
	VDBG_09054	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family. (202 aa)
	VDBG_09323	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	VDBG_09358	40S ribosomal protein S28. (68 aa)
	VDBG_09394	Uncharacterized protein. (449 aa)
	VDBG_09409	Uncharacterized protein. (187 aa)
	VDBG_09533	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (214 aa)
	VDBG_09759	Eukaryotic translation initiation factor 2A. (478 aa)
	VDBG_09814	60S ribosomal protein L28; Belongs to the universal ribosomal protein uL15 family. (149 aa)
	VDBG_09952	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (87 aa)
	VDBG_09978	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (139 aa)
	VDBG_02135	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (136 aa)
	VDBG_01574	60S ribosomal protein L26-1. (96 aa)
	VDBG_01608	50S ribosomal protein Mrp49. (199 aa)
	VDBG_01746	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (63 aa)
	VDBG_01819	40S ribosomal protein S27. (82 aa)
	VDBG_01982	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
	VDBG_01983	60S ribosomal protein L21-A. (160 aa)
	VDBG_02039	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	VDBG_02041	Uncharacterized protein. (407 aa)
	VDBG_02053	60S ribosomal protein L14-B. (147 aa)
	VDBG_02062	60S ribosomal protein L24. (160 aa)
	VDBG_02834	Uncharacterized protein. (239 aa)
	VDBG_03007	60S ribosomal protein L27-B. (135 aa)
	VDBG_03092	37S ribosomal protein MRP4. (396 aa)
	VDBG_02526	Mitochondrial 54S ribosomal protein L38; Belongs to the universal ribosomal protein uL14 family. (128 aa)
	VDBG_02566	Integral membrane protein. (575 aa)
	VDBG_03357	Uncharacterized protein. (140 aa)
	VDBG_02666	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
	VDBG_03852	60S ribosomal protein L20. (209 aa)
	VDBG_03887	Mitochondrial 37S ribosomal protein S8. (146 aa)
	VDBG_03922	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (110 aa)
	VDBG_04024	54S ribosomal protein L24. (259 aa)
	VDBG_03433	Predicted protein. (164 aa)
	VDBG_04111	Uncharacterized protein. (860 aa)
	VDBG_04112	60S ribosomal protein L4. (352 aa)
	VDBG_03479	37S ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (176 aa)
	VDBG_04177	IGR domain-containing protein. (225 aa)
	VDBG_04191	Mitochondrial 37S ribosomal protein SWS2; Belongs to the universal ribosomal protein uS13 family. (119 aa)
	VDBG_03557	40S ribosomal protein S27a. (153 aa)
	VDBG_03558	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (162 aa)
	VDBG_04228	Uncharacterized protein. (56 aa)
	VDBG_04256	50S ribosomal protein L17. (60 aa)
	VDBG_04259	37S ribosomal protein S24. (381 aa)
	VDBG_03669	54S ribosomal protein L9. (337 aa)
	VDBG_04277	60S ribosomal protein L5. (299 aa)
	VDBG_03744	60S ribosomal protein L31. (123 aa)
	VDBG_03807	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (160 aa)
	VDBG_03808	Uncharacterized protein. (238 aa)
	VDBG_04576	Uncharacterized protein. (98 aa)
	VDBG_04628	Superoxide dismutase. (304 aa)
	VDBG_04695	37S ribosomal protein S23. (449 aa)
	VDBG_04754	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPS0	RPS1	C9SKW3	C9S819	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
RPS0	VDBG_00064	C9SKW3	C9S8J6	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.993
RPS0	VDBG_00156	C9SKW3	C9S8X2	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	54S ribosomal protein L7.	0.892
RPS0	VDBG_00290	C9SKW3	C9S583	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S ribosomal protein L10.	0.999
RPS0	VDBG_00291	C9SKW3	C9S584	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S ribosomal protein L30-1.	0.999
RPS0	VDBG_00448	C9SKW3	C9S602	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S19.	0.999
RPS0	VDBG_00484	C9SKW3	C9S638	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.664
RPS0	VDBG_00570	C9SKW3	C9S6F0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S ribosomal protein L22.	0.998
RPS0	VDBG_00573	C9SKW3	C9S6F3	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.967
RPS0	VDBG_00806	C9SKW3	C9S7B3	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S28.	0.980
RPS0	VDBG_00898	C9SKW3	C9S7M8	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.894
RPS0	VDBG_00915	C9SKW3	C9S7S1	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	54S ribosomal protein L19; Belongs to the universal ribosomal protein uL11 family.	0.889
RPS0	VDBG_01121	C9SKW3	C9S5A4	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	54S ribosomal protein L3.	0.526
RPS0	VDBG_01125	C9SKW3	C9S5A8	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	S4 RNA-binding domain-containing protein.	0.974
RPS0	VDBG_01127	C9SKW3	C9S5B0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Predicted protein.	0.974
RPS0	VDBG_01156	C9SKW3	C9S5H0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.739
RPS0	VDBG_01374	C9SKW3	C9S7P8	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.871
RPS0	VDBG_01574	C9SKW3	C9SAL7	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S ribosomal protein L26-1.	0.999
RPS0	VDBG_01608	C9SKW3	C9SAS5	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	50S ribosomal protein Mrp49.	0.955
RPS0	VDBG_01746	C9SKW3	C9SB87	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.983