(54 nodes) SWI/SNF superfamily-type complex network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_04874	Uncharacterized protein. (744 aa)
	VDBG_00297	Predicted protein. (165 aa)
	VDBG_00599	Uncharacterized protein. (654 aa)
	VDBG_00722	Predicted protein. (385 aa)
	VDBG_00864	Uncharacterized protein. (605 aa)
	VDBG_00927	Predicted protein. (187 aa)
	VDBG_02465	Helicase SWR1. (1183 aa)
	VDBG_02803	DDT domain-containing protein. (540 aa)
	VDBG_02804	DDT domain-containing protein. (349 aa)
	VDBG_03929	Uncharacterized protein. (791 aa)
	VDBG_03434	ARID domain-containing protein. (1198 aa)
	VDBG_04149	INO80 chromatin remodeling complex Ies1. (618 aa)
	VDBG_04247	SWR1-complex protein. (461 aa)
	VDBG_03650	PAPA-1 domain-containing protein. (425 aa)
	VDBG_04293	ISWI chromatin-remodeling complex ATPase ISW2. (132 aa)
	VDBG_05608	Uncharacterized protein. (183 aa)
	VDBG_05609	Uncharacterized protein. (586 aa)
	VDBG_06037	Predicted protein. (279 aa)
	VDBG_06100	PH domain-containing protein. (162 aa)
	VDBG_06101	PH domain-containing protein. (286 aa)
	VDBG_06102	PH domain-containing protein. (239 aa)
	VDBG_06334	Uncharacterized protein. (473 aa)
	VDBG_06371	Chromatin structure-remodeling complex protein RSC7. (742 aa)
	VDBG_06781	Transcription regulatory protein SNF5. (724 aa)
	VDBG_06863	MYB and HSA domain-containing protein. (1764 aa)
	VDBG_06879	Uncharacterized protein. (496 aa)
	VDBG_07088	Uncharacterized protein. (206 aa)
	VDBG_07399	Bromo domain-containing protein. (580 aa)
	VDBG_07447	Chromatin structure-remodeling complex protein RSC2. (1002 aa)
	VDBG_07507	Uncharacterized protein. (343 aa)
	VDBG_07738	Fungal specific transcription factor domain-containing protein. (662 aa)
	VDBG_07827	Uncharacterized protein. (250 aa)
	VDBG_07957	Uncharacterized protein. (911 aa)
	VDBG_08805	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (728 aa)
	VDBG_08884	SWR1-complex protein. (257 aa)
	VDBG_08887	SNF2 family ATP-dependent chromatin-remodeling factor snf21. (1392 aa)
	VDBG_08919	YEATS domain-containing protein. (356 aa)
	VDBG_08937	Uncharacterized protein. (278 aa)
	VDBG_09661	Actin; Belongs to the actin family. (452 aa)
	VDBG_09466	Predicted protein. (180 aa)
	VDBG_09470	Predicted protein. (545 aa)
	VDBG_09471	Chromodomain-helicase-DNA-binding protein. (280 aa)
	VDBG_09472	Predicted protein. (316 aa)
	VDBG_09543	Predicted protein. (190 aa)
	VDBG_05106	PHD domain-containing protein. (741 aa)
	VDBG_04435	Predicted protein. (285 aa)
	VDBG_04434	Chromatin structure-remodeling complex protein RSC7. (489 aa)
	VDBG_04430	Uncharacterized protein. (98 aa)
	VDBG_04375	Uncharacterized protein; Belongs to the actin family. (882 aa)
	VDBG_04330	Transcription regulatory protein SWI3. (644 aa)
	VDBG_03709	Actin; Belongs to the actin family. (450 aa)
	VDBG_05189	Uncharacterized protein. (269 aa)
	VDBG_05176	Uncharacterized protein; Belongs to the actin family. (441 aa)
	VDBG_05174	YL1_C domain-containing protein. (198 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00297	VDBG_03709	C9S590	C9SH06	Predicted protein.	Actin; Belongs to the actin family.	0.756
VDBG_00297	VDBG_05174	C9S590	C9SK47	Predicted protein.	YL1_C domain-containing protein.	0.619
VDBG_00297	VDBG_05176	C9S590	C9SK49	Predicted protein.	Uncharacterized protein; Belongs to the actin family.	0.428
VDBG_00297	VDBG_08805	C9S590	C9SV80	Predicted protein.	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.	0.878
VDBG_00599	VDBG_03709	C9S6K0	C9SH06	Uncharacterized protein.	Actin; Belongs to the actin family.	0.788
VDBG_00599	VDBG_04247	C9S6K0	C9SGI8	Uncharacterized protein.	SWR1-complex protein.	0.807
VDBG_00599	VDBG_05176	C9S6K0	C9SK49	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.439
VDBG_00599	VDBG_08884	C9S6K0	C9SVF9	Uncharacterized protein.	SWR1-complex protein.	0.594
VDBG_00599	VDBG_09661	C9S6K0	C9SX10	Uncharacterized protein.	Actin; Belongs to the actin family.	0.692
VDBG_00722	VDBG_00864	C9S703	C9S7J4	Predicted protein.	Uncharacterized protein.	0.572
VDBG_00722	VDBG_03709	C9S703	C9SH06	Predicted protein.	Actin; Belongs to the actin family.	0.513
VDBG_00722	VDBG_04330	C9S703	C9SJ59	Predicted protein.	Transcription regulatory protein SWI3.	0.791
VDBG_00722	VDBG_06334	C9S703	C9SN59	Predicted protein.	Uncharacterized protein.	0.722
VDBG_00722	VDBG_06781	C9S703	C9SPF6	Predicted protein.	Transcription regulatory protein SNF5.	0.572
VDBG_00864	VDBG_00722	C9S7J4	C9S703	Uncharacterized protein.	Predicted protein.	0.572
VDBG_00864	VDBG_03709	C9S7J4	C9SH06	Uncharacterized protein.	Actin; Belongs to the actin family.	0.912
VDBG_00864	VDBG_04330	C9S7J4	C9SJ59	Uncharacterized protein.	Transcription regulatory protein SWI3.	0.907
VDBG_00864	VDBG_04375	C9S7J4	C9SJA4	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.462
VDBG_00864	VDBG_06037	C9S7J4	C9SMB3	Uncharacterized protein.	Predicted protein.	0.572
VDBG_00864	VDBG_07088	C9S7J4	C9SQ53	Uncharacterized protein.	Uncharacterized protein.	0.572