(9 nodes) Ubiquitin interacting motif network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_07951	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane. (685 aa)
	VDBG_08190	Mating-type switching protein swi10. (414 aa)
	VDBG_09282	Class E vacuolar protein-sorting machinery protein HSE1. (690 aa)
	VDBG_09300	EH domain binding protein epsin 2. (420 aa)
	VDBG_00721	PHD domain-containing protein. (621 aa)
	VDBG_00728	F-box and WD domain-containing protein. (1249 aa)
	VDBG_00204	Uncharacterized protein. (897 aa)
	VDBG_03753	DNA-repair protein rad13. (1209 aa)
	VDBG_03842	CHIP6. (1298 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_03753	VDBG_08190	C9SH50	C9STG5	DNA-repair protein rad13.	Mating-type switching protein swi10.	0.782
VDBG_07951	VDBG_09282	C9SSS6	C9SWK7	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.	Class E vacuolar protein-sorting machinery protein HSE1.	0.999
VDBG_07951	VDBG_09300	C9SSS6	C9SWM5	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.	EH domain binding protein epsin 2.	0.808
VDBG_08190	VDBG_03753	C9STG5	C9SH50	Mating-type switching protein swi10.	DNA-repair protein rad13.	0.782
VDBG_09282	VDBG_07951	C9SWK7	C9SSS6	Class E vacuolar protein-sorting machinery protein HSE1.	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.	0.999
VDBG_09282	VDBG_09300	C9SWK7	C9SWM5	Class E vacuolar protein-sorting machinery protein HSE1.	EH domain binding protein epsin 2.	0.720
VDBG_09300	VDBG_07951	C9SWM5	C9SSS6	EH domain binding protein epsin 2.	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.	0.808
VDBG_09300	VDBG_09282	C9SWM5	C9SWK7	EH domain binding protein epsin 2.	Class E vacuolar protein-sorting machinery protein HSE1.	0.720