STRINGSTRING
VDBG_01100 VDBG_01100 VDBG_02276 VDBG_02276 VDBG_02416 VDBG_02416 VDBG_01529 VDBG_01529 VDBG_02496 VDBG_02496 VDBG_01799 VDBG_01799 VDBG_01834 VDBG_01834 VDBG_01881 VDBG_01881 VDBG_01969 VDBG_01969 VDBG_02075 VDBG_02075 VDBG_02854 VDBG_02854 VDBG_03011 VDBG_03011 VDBG_03063 VDBG_03063 VDBG_03095 VDBG_03095 VDBG_02513 VDBG_02513 VDBG_03423 VDBG_03423 VDBG_02618 VDBG_02618 VDBG_04051 VDBG_04051 VDBG_03566 VDBG_03566 VDBG_00383 VDBG_00383 VDBG_00490 VDBG_00490 VDBG_00583 VDBG_00583 VDBG_00622 VDBG_00622 VDBG_00641 VDBG_00641 VDBG_00856 VDBG_00856 VDBG_00074 VDBG_00074 VDBG_00166 VDBG_00166 VDBG_04295 VDBG_04295 VDBG_04504 VDBG_04504 VDBG_04641 VDBG_04641 VDBG_04686 VDBG_04686 VDBG_04717 VDBG_04717 VDBG_04816 VDBG_04816 VDBG_04878 VDBG_04878 VDBG_04922 VDBG_04922 VDBG_05044 VDBG_05044 VDBG_04376 VDBG_04376 VDBG_04451 VDBG_04451 VDBG_05786 VDBG_05786 VDBG_05126 VDBG_05126 VDBG_05992 VDBG_05992 VDBG_06048 VDBG_06048 VDBG_06225 VDBG_06225 VDBG_06284 VDBG_06284 VDBG_06363 VDBG_06363 VDBG_06409 VDBG_06409 VDBG_06454 VDBG_06454 VDBG_06632 VDBG_06632 VDBG_06883 VDBG_06883 VDBG_07022 VDBG_07022 VDBG_07152 VDBG_07152 VDBG_07254 VDBG_07254 VDBG_07384 VDBG_07384 VDBG_06964 VDBG_06964 SLX1 SLX1 VDBG_07635 VDBG_07635 VDBG_07749 VDBG_07749 VDBG_07780 VDBG_07780 VDBG_07858 VDBG_07858 VDBG_07913 VDBG_07913 VDBG_08073 VDBG_08073 VDBG_08110 VDBG_08110 VDBG_08790 VDBG_08790 VDBG_08855 VDBG_08855 VDBG_08869 VDBG_08869 VDBG_08996 VDBG_08996 VDBG_09202 VDBG_09202 VDBG_09653 VDBG_09653 VDBG_09365 VDBG_09365 VDBG_09423 VDBG_09423 VDBG_09677 VDBG_09677 VDBG_09906 VDBG_09906 VDBG_10004 VDBG_10004 VDBG_10076 VDBG_10076 VDBG_10167 VDBG_10167
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_01100C2H2-type domain-containing protein. (236 aa)
VDBG_02276C2H2-type domain-containing protein. (586 aa)
VDBG_02416Uncharacterized protein. (843 aa)
VDBG_01529Gastrula zinc finger protein XlCGF17.1. (358 aa)
VDBG_02496Zinc finger protein. (812 aa)
VDBG_01799C2H2-type domain-containing protein. (473 aa)
VDBG_01834Uncharacterized protein. (376 aa)
VDBG_01881Uncharacterized protein. (569 aa)
VDBG_01969DNA polymerase IV. (631 aa)
VDBG_02075Uncharacterized protein. (706 aa)
VDBG_02854C2H2-type domain-containing protein. (124 aa)
VDBG_03011General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (468 aa)
VDBG_03063Uncharacterized protein. (336 aa)
VDBG_03095Metallothionein expression activator. (695 aa)
VDBG_02513C2H2 type zinc finger domain-containing protein. (559 aa)
VDBG_03423Uncharacterized protein. (445 aa)
VDBG_02618C2H2 type zinc finger domain-containing protein. (756 aa)
VDBG_04051C2H2-type domain-containing protein. (382 aa)
VDBG_03566Uncharacterized protein. (153 aa)
VDBG_00383U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (179 aa)
VDBG_00490Uncharacterized protein. (309 aa)
VDBG_00583CMR1. (588 aa)
VDBG_00622DNA-binding protein. (317 aa)
VDBG_00641C2H2-type domain-containing protein. (333 aa)
VDBG_00856Uncharacterized protein. (1175 aa)
VDBG_00074Zinc finger protein RTS2. (338 aa)
VDBG_00166Zinc finger protein. (439 aa)
VDBG_04295Uncharacterized protein. (847 aa)
VDBG_04504Chorion transcription factor Cf2. (552 aa)
VDBG_04641Uncharacterized protein. (329 aa)
VDBG_04686Cutinase G-box binding protein. (572 aa)
VDBG_04717C2H2 finger domain containing protein FlbC. (401 aa)
VDBG_04816Uncharacterized protein. (720 aa)
VDBG_04878Zinc finger protein. (383 aa)
VDBG_04922C2H2-type domain-containing protein. (755 aa)
VDBG_05044Uncharacterized protein. (254 aa)
VDBG_04376RfeC. (1137 aa)
VDBG_04451C2H2-type domain-containing protein. (912 aa)
VDBG_05786C2H2-type domain-containing protein. (393 aa)
VDBG_05126Zinc finger protein. (968 aa)
VDBG_05992Zinc finger transcription factor ace1. (583 aa)
VDBG_06048Oocyte zinc finger protein XlCOF20. (358 aa)
VDBG_06225C2H2-type domain-containing protein. (452 aa)
VDBG_06284Uncharacterized protein. (598 aa)
VDBG_06363Splicing factor 3A subunit 2. (241 aa)
VDBG_06409C2H2-type domain-containing protein. (430 aa)
VDBG_06454Uncharacterized protein. (555 aa)
VDBG_06632Transcriptional regulator. (374 aa)
VDBG_06883Zinc finger protein. (265 aa)
VDBG_07022Uncharacterized protein. (539 aa)
VDBG_07152HIT-type domain-containing protein. (285 aa)
VDBG_07254Predicted protein. (554 aa)
VDBG_07384C2H2-type domain-containing protein. (710 aa)
VDBG_06964C2H2 type zinc finger domain-containing protein. (141 aa)
SLX1Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (454 aa)
VDBG_07635Uncharacterized protein. (814 aa)
VDBG_07749Uncharacterized protein. (784 aa)
VDBG_07780Predicted protein. (647 aa)
VDBG_07858C2H2 type zinc finger domain-containing protein. (267 aa)
VDBG_07913Zinc finger protein Yan. (545 aa)
VDBG_08073Zinc finger protein. (330 aa)
VDBG_08110C2H2-type domain-containing protein. (81 aa)
VDBG_08790Zinc finger protein. (451 aa)
VDBG_08855pH-response transcription factor pacC/RIM101. (572 aa)
VDBG_08869C2H2-type domain-containing protein. (453 aa)
VDBG_08996Predicted protein. (112 aa)
VDBG_09202C2H2-type domain-containing protein. (306 aa)
VDBG_09653C2H2-type domain-containing protein. (706 aa)
VDBG_09365Zinc finger protein. (585 aa)
VDBG_09423Uncharacterized protein. (516 aa)
VDBG_09677DnaJ domain-containing protein. (506 aa)
VDBG_09906RING-6. (352 aa)
VDBG_10004C2H2-type domain-containing protein. (363 aa)
VDBG_10076zf-U1 domain-containing protein. (199 aa)
VDBG_10167C2H2-type domain-containing protein. (687 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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