STRINGSTRING
VDBG_07081 VDBG_07081 VDBG_00479 VDBG_00479 VDBG_00367 VDBG_00367 VDBG_08240 VDBG_08240 VDBG_08546 VDBG_08546 VDBG_08479 VDBG_08479 VDBG_08406 VDBG_08406 VDBG_00709 VDBG_00709 VDBG_01343 VDBG_01343 VDBG_00920 VDBG_00920 VDBG_02140 VDBG_02140 VDBG_01506 VDBG_01506 VDBG_01658 VDBG_01658 VDBG_02076 VDBG_02076 VDBG_03119 VDBG_03119 VDBG_02615 VDBG_02615 VDBG_04199 VDBG_04199 VDBG_04559 VDBG_04559 VDBG_04833 VDBG_04833 VDBG_04358 VDBG_04358 VDBG_05573 VDBG_05573 VDBG_05721 VDBG_05721 VDBG_06168 VDBG_06168 VDBG_06768 VDBG_06768 ADI1 ADI1 VDBG_07530 VDBG_07530 VDBG_07595 VDBG_07595 VDBG_07740 VDBG_07740 VDBG_07997 VDBG_07997 VDBG_09959 VDBG_09959 VDBG_09662 VDBG_09662 VDBG_09257 VDBG_09257
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_07081Homogentisate 1,2-dioxygenase. (478 aa)
VDBG_00479Oxalate decarboxylase oxdC. (320 aa)
VDBG_00367cAMP-dependent protein kinase regulatory subunit. (216 aa)
VDBG_08240Lysophospholipase NTE1; Intracellular phospholipase B that catalyzes the double deacylation of phosphatidylcholine (PC) to glycerophosphocholine (GroPCho). Plays an important role in membrane lipid homeostasis. (1387 aa)
VDBG_08546Cupin type-1 domain-containing protein. (202 aa)
VDBG_08479Homogentisate 1,2-dioxygenase. (445 aa)
VDBG_08406Mannose-6-phosphate isomerase. (406 aa)
VDBG_00709YhhW; Belongs to the pirin family. (251 aa)
VDBG_01343Cupin 2 conserved barrel domain-containing protein. (130 aa)
VDBG_00920Cysteine dioxygenase. (218 aa)
VDBG_02140Mannose-6-phosphate isomerase. (453 aa)
VDBG_01506Pirin; Belongs to the pirin family. (302 aa)
VDBG_01658Uncharacterized protein. (95 aa)
VDBG_02076Cupin domain-containing protein. (353 aa)
VDBG_03119Spherulin-1A. (261 aa)
VDBG_02615Cupin domain-containing protein. (182 aa)
VDBG_04199PLA2G4B protein. (71 aa)
VDBG_045593-hydroxyanthranilate 3,4-dioxygenase. (164 aa)
VDBG_04833Sulfate transporter family protein. (1091 aa)
VDBG_04358Spherulin-1B. (173 aa)
VDBG_05573Cupin domain-containing protein. (653 aa)
VDBG_05721Cupin domain-containing protein. (177 aa)
VDBG_06168Cupin 2. (191 aa)
VDBG_06768Uncharacterized protein. (209 aa)
ADI11,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). (176 aa)
VDBG_07530Oxalate decarboxylase oxdC. (480 aa)
VDBG_07595Cupin_2 domain-containing protein. (232 aa)
VDBG_07740Gentisate 1,2-dioxygenase. (316 aa)
VDBG_07997Cupin_2 domain-containing protein. (164 aa)
VDBG_09959Cyclic nucleotide-binding domain-containing protein. (894 aa)
VDBG_09662Spherulin-1A. (235 aa)
VDBG_09257Homogentisate 1,2-dioxygenase. (473 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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