STRINGSTRING
VDBG_00750 VDBG_00750 VDBG_01574 VDBG_01574 VDBG_01805 VDBG_01805 VDBG_02053 VDBG_02053 VDBG_03982 VDBG_03982 VDBG_04160 VDBG_04160 VDBG_04824 VDBG_04824 VDBG_05109 VDBG_05109 VDBG_06880 VDBG_06880
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00750Eukaryotic translation initiation factor 5A. (161 aa)
VDBG_0157460S ribosomal protein L26-1. (96 aa)
VDBG_01805Woronin body major protein. (131 aa)
VDBG_0205360S ribosomal protein L14-B. (147 aa)
VDBG_03982Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1034 aa)
VDBG_041605'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1383 aa)
VDBG_0482460S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (202 aa)
VDBG_0510954S ribosomal protein RML2. (392 aa)
VDBG_0688060S ribosomal protein L2. (254 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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