(57 nodes) Pyridoxal phosphate-dependent transferase network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_02778	Aminotransferase. (437 aa)
	VDBG_00339	Cysteine desulfurase. (482 aa)
	VDBG_00577	Pyridoxal-dependent decarboxylase. (309 aa)
	VDBG_01287	Uncharacterized protein. (363 aa)
	VDBG_00987	Histidinol-phosphate aminotransferase. (415 aa)
	VDBG_00093	Phosphoserine aminotransferase. (433 aa)
	VDBG_00171	Aminotran_5 domain-containing protein. (334 aa)
	VDBG_02256	Glycine dehydrogenase. (117 aa)
	VDBG_04026	Aspartate aminotransferase. (423 aa)
	VDBG_03885	Aspartate aminotransferase. (366 aa)
	VDBG_02257	Glycine dehydrogenase. (797 aa)
	VDBG_01515	Aminotran_1_2 domain-containing protein. (476 aa)
	VDBG_01731	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (491 aa)
	VDBG_02963	8-amino-7-oxononanoate synthase. (495 aa)
	VDBG_03027	O-acetylhomoserine (Thiol)-lyase. (426 aa)
	VDBG_03326	Aspartate aminotransferase. (403 aa)
	VDBG_03393	Alanine-glyoxylate aminotransferase. (388 aa)
	VDBG_04113	Aromatic amino acid aminotransferase. (646 aa)
	VDBG_03530	Aspartate aminotransferase. (371 aa)
	VDBG_03593	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (410 aa)
	VDBG_04545	Cystathionine gamma-synthase. (553 aa)
	hxB	Molybdenum cofactor sulfurase; Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. (819 aa)
	VDBG_04940	Aromatic amino acid aminotransferase. (562 aa)
	VDBG_04324	Ornithine aminotransferase. (142 aa)
	VDBG_04339	Cystathionine beta-lyase. (441 aa)
	VDBG_05791	Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (422 aa)
	VDBG_05822	Kynurenine-oxoglutarate transaminase. (426 aa)
	VDBG_05290	Sphingosine-1-phosphate lyase. (566 aa)
	VDBG_05875	Threonine aldolase. (389 aa)
	VDBG_06080	Cystathionine gamma-synthase. (418 aa)
	VDBG_06151	Cystathionine gamma-lyase. (378 aa)
	VDBG_06484	1-aminocyclopropane-1-carboxylate synthase. (423 aa)
	VDBG_06686	Ornithine aminotransferase. (303 aa)
	VDBG_07049	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (536 aa)
	VDBG_07422	Serine palmitoyltransferase. (836 aa)
	VDBG_07470	Molybdenum cofactor sulfurase. (482 aa)
	VDBG_07509	Cysteine sulfinic acid decarboxylase. (182 aa)
	VDBG_07576	O-acetylhomoserine (Thiol)-lyase. (468 aa)
	VDBG_07632	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase. (782 aa)
	VDBG_07633	8-amino-7-oxononanoate synthase. (316 aa)
	VDBG_07722	Serine palmitoyltransferase. (663 aa)
	VDBG_07881	Glutamate-1-semialdehyde 2,1-aminomutase. (263 aa)
	VDBG_07930	1-aminocyclopropane-1-carboxylate synthase. (398 aa)
	VDBG_07968	Alanine aminotransferase. (399 aa)
	VDBG_08323	Histidine decarboxylase. (397 aa)
	VDBG_08328	Aminotransferase. (286 aa)
	VDBG_08356	Aspartate aminotransferase. (87 aa)
	VDBG_08523	Glutamate decarboxylase. (464 aa)
	VDBG_08594	LolT-1. (440 aa)
	VDBG_08681	5-aminolevulinate synthase. (1673 aa)
	VDBG_08737	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (316 aa)
	VDBG_09561	LolT-1. (451 aa)
	VDBG_09622	2,2-dialkylglycine decarboxylase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (354 aa)
	BNA5	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family. (488 aa)
	VDBG_09333	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (421 aa)
	VDBG_09494	Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (474 aa)
	VDBG_09679	Cystathionine gamma-synthase. (613 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BNA5	VDBG_01515	C9SX15	C9SAC9	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Aminotran_1_2 domain-containing protein.	0.533
BNA5	VDBG_03530	C9SX15	C9SG17	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Aspartate aminotransferase.	0.439
BNA5	VDBG_03885	C9SX15	C9SEZ0	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Aspartate aminotransferase.	0.439
BNA5	VDBG_05822	C9SX15	C9SJU9	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Kynurenine-oxoglutarate transaminase.	0.965
BNA5	VDBG_06484	C9SX15	C9SNK9	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	1-aminocyclopropane-1-carboxylate synthase.	0.406
BNA5	VDBG_07930	C9SX15	C9SSQ5	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	1-aminocyclopropane-1-carboxylate synthase.	0.406
BNA5	VDBG_07968	C9SX15	C9SSU3	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Alanine aminotransferase.	0.406
BNA5	VDBG_09622	C9SX15	C9SWX1	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	2,2-dialkylglycine decarboxylase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.432
VDBG_00093	VDBG_00987	C9S8M5	C9S832	Phosphoserine aminotransferase.	Histidinol-phosphate aminotransferase.	0.426
VDBG_00093	VDBG_03326	C9S8M5	C9SDU7	Phosphoserine aminotransferase.	Aspartate aminotransferase.	0.444
VDBG_00093	VDBG_03393	C9S8M5	C9SE37	Phosphoserine aminotransferase.	Alanine-glyoxylate aminotransferase.	0.637
VDBG_00093	VDBG_03593	C9S8M5	C9SGE4	Phosphoserine aminotransferase.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.699
VDBG_00093	VDBG_04026	C9S8M5	C9SFD1	Phosphoserine aminotransferase.	Aspartate aminotransferase.	0.654
VDBG_00093	VDBG_05875	C9S8M5	C9SLV1	Phosphoserine aminotransferase.	Threonine aldolase.	0.534
VDBG_00093	VDBG_07049	C9S8M5	C9SQ14	Phosphoserine aminotransferase.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.699
VDBG_00093	VDBG_07968	C9S8M5	C9SSU3	Phosphoserine aminotransferase.	Alanine aminotransferase.	0.473
VDBG_00093	VDBG_08356	C9S8M5	C9STT5	Phosphoserine aminotransferase.	Aspartate aminotransferase.	0.620
VDBG_00171	VDBG_07470	C9S916	C9SRE5	Aminotran_5 domain-containing protein.	Molybdenum cofactor sulfurase.	0.416
VDBG_00171	VDBG_08594	C9S916	C9SUH3	Aminotran_5 domain-containing protein.	LolT-1.	0.906
VDBG_00171	VDBG_09561	C9S916	C9SWR0	Aminotran_5 domain-containing protein.	LolT-1.	0.906