STRINGSTRING
VDBG_00257 VDBG_00257 VDBG_00671 VDBG_00671 VDBG_00954 VDBG_00954 VDBG_07434 VDBG_07434 VDBG_07685 VDBG_07685
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00257Homoaconitase, mitochondrial; Catalyzes the reversible hydration of cis-homoaconitate to (2R,3S)-homoisocitrate, a step in the alpha-aminoadipate pathway for lysine biosynthesis. (763 aa)
VDBG_00671Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. (820 aa)
VDBG_009543-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (775 aa)
VDBG_07434Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. (705 aa)
VDBG_07685Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. (704 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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