(27 nodes) Ribosomal protein S5 domain 2-type fold network (Verticillium alfalfae)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Predicted Interactions

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Your Input:
	VDBG_06627	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	VDBG_06938	Elongation factor 2. (1001 aa)
	VDBG_07341	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (258 aa)
	VDBG_08284	Lon protease homolog; Belongs to the peptidase S16 family. (852 aa)
	VDBG_08287	DNA mismatch repair protein mutL. (628 aa)
	VDBG_08390	Phosphomevalonate kinase; Belongs to the GHMP kinase family. Mevalonate kinase subfamily. (439 aa)
	VDBG_08232	3' exoribonuclease family protein. (251 aa)
	VDBG_09932	Exosome complex exonuclease RRP41. (155 aa)
	VDBG_09407	Heat shock protein. (651 aa)
	VDBG_00851	Elongation factor 2. (820 aa)
	VDBG_00992	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1688 aa)
	VDBG_00064	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (336 aa)
	VDBG_00200	Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family. (229 aa)
	VDBG_02195	Exosome complex exonuclease RRP43. (340 aa)
	VDBG_01699	Homoserine kinase. (364 aa)
	VDBG_02883	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family. (412 aa)
	VDBG_03370	Mevalonate kinase; Catalyzes the phosphorylation of mevalonate to mevalonate 5- phosphate, a key step in isoprenoid and cholesterol biosynthesis. Belongs to the GHMP kinase family. Mevalonate kinase subfamily. (445 aa)
	MEF1	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (796 aa)
	VDBG_04123	UPF0029 domain-containing protein. (272 aa)
	VDBG_03680	RNase_PH domain-containing protein. (373 aa)
	VDBG_03736	116 kDa U5 small nuclear ribonucleoprotein component. (983 aa)
	VDBG_04401	Lon protease homolog; Belongs to the peptidase S16 family. (841 aa)
	VDBG_05136	DNA mismatch repair protein mutL. (651 aa)
	VDBG_05246	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (421 aa)
	VDBG_05847	RNase_PH domain-containing protein. (249 aa)
	VDBG_06407	GAL3. (532 aa)
	VDBG_06740	Exosome complex exonuclease RRP45. (271 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MEF1	VDBG_00064	C9SEZ5	C9S8J6	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.857
MEF1	VDBG_05246	C9SEZ5	C9SKB9	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.742
MEF1	VDBG_06627	C9SEZ5	C9SP02	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.645
MEF1	VDBG_07341	C9SEZ5	C9SQV6	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.879
VDBG_00064	MEF1	C9S8J6	C9SEZ5	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.857
VDBG_00064	VDBG_00851	C9S8J6	C9S7I1	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Elongation factor 2.	0.857
VDBG_00064	VDBG_00992	C9S8J6	C9S837	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	0.626
VDBG_00064	VDBG_03736	C9S8J6	C9SH33	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	116 kDa U5 small nuclear ribonucleoprotein component.	0.857
VDBG_00064	VDBG_05246	C9S8J6	C9SKB9	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
VDBG_00064	VDBG_06627	C9S8J6	C9SP02	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.897
VDBG_00064	VDBG_06938	C9S8J6	C9SPW3	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Elongation factor 2.	0.857
VDBG_00064	VDBG_07341	C9S8J6	C9SQV6	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.994
VDBG_00200	VDBG_01699	C9S945	C9SB40	Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family.	Homoserine kinase.	0.640
VDBG_00200	VDBG_06407	C9S945	C9SND2	Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family.	GAL3.	0.485
VDBG_00851	VDBG_00064	C9S7I1	C9S8J6	Elongation factor 2.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.857
VDBG_00851	VDBG_00992	C9S7I1	C9S837	Elongation factor 2.	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	0.665
VDBG_00851	VDBG_05246	C9S7I1	C9SKB9	Elongation factor 2.	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.742
VDBG_00851	VDBG_06627	C9S7I1	C9SP02	Elongation factor 2.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.997
VDBG_00851	VDBG_07341	C9S7I1	C9SQV6	Elongation factor 2.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.999
VDBG_00851	VDBG_09407	C9S7I1	C9SXA7	Elongation factor 2.	Heat shock protein.	0.511