(20 nodes) ClpP/crotonase-like domain superfamily network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_01158	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (285 aa)
	VDBG_01391	Enoyl-CoA hydratase/isomerase family protein. (276 aa)
	VDBG_02437	Short chain enoyl-CoA hydratase. (230 aa)
	VDBG_01631	Methylcrotonoyl-CoA carboxylase beta chain. (608 aa)
	VDBG_02839	Enoyl-CoA hydratase. (261 aa)
	VDBG_03104	Mitochondrial methylglutaconyl-CoA hydratase. (388 aa)
	VDBG_03211	Carnitinyl-CoA dehydratase. (283 aa)
	VDBG_03212	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (279 aa)
	VDBG_02755	Acetyl-CoA carboxylase. (1763 aa)
	VDBG_05776	Enoyl-CoA hydratase/isomerase family protein. (263 aa)
	VDBG_06253	TSPc domain-containing protein. (683 aa)
	VDBG_06471	Enoyl-CoA hydratase/isomerase family protein. (309 aa)
	VDBG_06649	TSPc domain-containing protein. (636 aa)
	VDBG_06897	Uncharacterized protein. (275 aa)
	VDBG_07232	Enoyl-CoA hydratase. (305 aa)
	VDBG_07520	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family. (484 aa)
	VDBG_07690	TSPc domain-containing protein. (711 aa)
	VDBG_08368	Enoyl-CoA hydratase. (288 aa)
	VDBG_08574	Hydrogenase maturation factor hoxX. (756 aa)
	VDBG_09381	ATP-dependent Clp protease proteolytic subunit. (238 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_01158	VDBG_01631	C9S5H2	C9SAU8	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	Methylcrotonoyl-CoA carboxylase beta chain.	0.540
VDBG_01158	VDBG_07520	C9S5H2	C9SRJ5	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.460
VDBG_01631	VDBG_01158	C9SAU8	C9S5H2	Methylcrotonoyl-CoA carboxylase beta chain.	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.540
VDBG_01631	VDBG_02437	C9SAU8	C9SAG0	Methylcrotonoyl-CoA carboxylase beta chain.	Short chain enoyl-CoA hydratase.	0.953
VDBG_01631	VDBG_02755	C9SAU8	C9SEQ3	Methylcrotonoyl-CoA carboxylase beta chain.	Acetyl-CoA carboxylase.	0.868
VDBG_01631	VDBG_02839	C9SAU8	C9SCB5	Methylcrotonoyl-CoA carboxylase beta chain.	Enoyl-CoA hydratase.	0.953
VDBG_01631	VDBG_03104	C9SAU8	C9SD30	Methylcrotonoyl-CoA carboxylase beta chain.	Mitochondrial methylglutaconyl-CoA hydratase.	0.819
VDBG_01631	VDBG_03211	C9SAU8	C9SDF0	Methylcrotonoyl-CoA carboxylase beta chain.	Carnitinyl-CoA dehydratase.	0.540
VDBG_01631	VDBG_03212	C9SAU8	C9SDF1	Methylcrotonoyl-CoA carboxylase beta chain.	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.540
VDBG_01631	VDBG_05776	C9SAU8	C9SJQ3	Methylcrotonoyl-CoA carboxylase beta chain.	Enoyl-CoA hydratase/isomerase family protein.	0.952
VDBG_01631	VDBG_06471	C9SAU8	C9SNJ6	Methylcrotonoyl-CoA carboxylase beta chain.	Enoyl-CoA hydratase/isomerase family protein.	0.540
VDBG_01631	VDBG_06897	C9SAU8	C9SPS2	Methylcrotonoyl-CoA carboxylase beta chain.	Uncharacterized protein.	0.540
VDBG_01631	VDBG_07232	C9SAU8	C9SQJ7	Methylcrotonoyl-CoA carboxylase beta chain.	Enoyl-CoA hydratase.	0.540
VDBG_01631	VDBG_07520	C9SAU8	C9SRJ5	Methylcrotonoyl-CoA carboxylase beta chain.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.540
VDBG_01631	VDBG_08368	C9SAU8	C9STU7	Methylcrotonoyl-CoA carboxylase beta chain.	Enoyl-CoA hydratase.	0.540
VDBG_01631	VDBG_08574	C9SAU8	C9SUF3	Methylcrotonoyl-CoA carboxylase beta chain.	Hydrogenase maturation factor hoxX.	0.540
VDBG_01631	VDBG_09381	C9SAU8	C9SX81	Methylcrotonoyl-CoA carboxylase beta chain.	ATP-dependent Clp protease proteolytic subunit.	0.637
VDBG_02437	VDBG_01631	C9SAG0	C9SAU8	Short chain enoyl-CoA hydratase.	Methylcrotonoyl-CoA carboxylase beta chain.	0.953
VDBG_02437	VDBG_02839	C9SAG0	C9SCB5	Short chain enoyl-CoA hydratase.	Enoyl-CoA hydratase.	0.912
VDBG_02437	VDBG_05776	C9SAG0	C9SJQ3	Short chain enoyl-CoA hydratase.	Enoyl-CoA hydratase/isomerase family protein.	0.923