27 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_05854	Ubiquitin. (82 aa)
	VDBG_00247	Uncharacterized protein. (626 aa)
	VDBG_00622	DNA-binding protein. (317 aa)
	VDBG_00752	60S ribosomal protein L40. (138 aa)
	VDBG_02404	UBX domain-containing protein. (331 aa)
	VDBG_01957	UBX domain-containing protein. (515 aa)
	VDBG_01963	Ubiquitin carboxyl-terminal hydrolase. (541 aa)
	VDBG_02577	Nucleotide excision repair protein RAD23. (394 aa)
	VDBG_03997	Autophagy-related protein. (93 aa)
	VDBG_03557	40S ribosomal protein S27a. (153 aa)
	VDBG_03686	Deubiquitination-protection protein dph1. (413 aa)
	VDBG_04642	NPL4. (250 aa)
	VDBG_04383	DNA damage-inducible protein. (181 aa)
	VDBG_05821	Ubiquitin-like domain-containing protein. (312 aa)
	VDBG_05210	Ubiquitin-like domain-containing protein. (203 aa)
	VDBG_05305	Uncharacterized protein. (52 aa)
	VDBG_05454	Ubiquitin/metalloprotease fusion protein. (356 aa)
	VDBG_05838	SMT3. (98 aa)
	VDBG_05970	TUG-UBL1 domain-containing protein. (513 aa)
	VDBG_06108	Ubiquitin-like domain-containing protein. (523 aa)
	VDBG_07605	UBX domain-containing protein. (416 aa)
	VDBG_07725	Ste50p. (356 aa)
	VDBG_08022	Ubiquitin. (126 aa)
	VDBG_08165	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy. (145 aa)
	VDBG_08364	Rad60-SLD_2 domain-containing protein. (289 aa)
	VDBG_09053	BAG domain-containing protein. (381 aa)
	VDBG_09444	Ubiquitin-like domain-containing protein. (744 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00622	VDBG_00752	C9S6M3	C9S759	DNA-binding protein.	60S ribosomal protein L40.	0.511
VDBG_00622	VDBG_01957	C9S6M3	C9SBW4	DNA-binding protein.	UBX domain-containing protein.	0.855
VDBG_00622	VDBG_02404	C9S6M3	C9SA82	DNA-binding protein.	UBX domain-containing protein.	0.979
VDBG_00622	VDBG_02577	C9S6M3	C9SE59	DNA-binding protein.	Nucleotide excision repair protein RAD23.	0.887
VDBG_00622	VDBG_03557	C9S6M3	C9SGA8	DNA-binding protein.	40S ribosomal protein S27a.	0.461
VDBG_00622	VDBG_03686	C9S6M3	C9SGV5	DNA-binding protein.	Deubiquitination-protection protein dph1.	0.500
VDBG_00622	VDBG_05210	C9S6M3	C9SK83	DNA-binding protein.	Ubiquitin-like domain-containing protein.	0.592
VDBG_00622	VDBG_05854	C9S6M3	C9SLT0	DNA-binding protein.	Ubiquitin.	0.454
VDBG_00622	VDBG_05970	C9S6M3	C9SM46	DNA-binding protein.	TUG-UBL1 domain-containing protein.	0.684
VDBG_00622	VDBG_07605	C9S6M3	C9SRT0	DNA-binding protein.	UBX domain-containing protein.	0.966
VDBG_00622	VDBG_08022	C9S6M3	C9SSZ7	DNA-binding protein.	Ubiquitin.	0.592
VDBG_00752	VDBG_00622	C9S759	C9S6M3	60S ribosomal protein L40.	DNA-binding protein.	0.511
VDBG_00752	VDBG_01963	C9S759	C9SBX0	60S ribosomal protein L40.	Ubiquitin carboxyl-terminal hydrolase.	0.901
VDBG_00752	VDBG_02404	C9S759	C9SA82	60S ribosomal protein L40.	UBX domain-containing protein.	0.630
VDBG_00752	VDBG_02577	C9S759	C9SE59	60S ribosomal protein L40.	Nucleotide excision repair protein RAD23.	0.929
VDBG_00752	VDBG_03557	C9S759	C9SGA8	60S ribosomal protein L40.	40S ribosomal protein S27a.	0.987
VDBG_00752	VDBG_03686	C9S759	C9SGV5	60S ribosomal protein L40.	Deubiquitination-protection protein dph1.	0.771
VDBG_00752	VDBG_04383	C9S759	C9SJB2	60S ribosomal protein L40.	DNA damage-inducible protein.	0.578
VDBG_00752	VDBG_04642	C9S759	C9SHW0	60S ribosomal protein L40.	NPL4.	0.759
VDBG_00752	VDBG_05210	C9S759	C9SK83	60S ribosomal protein L40.	Ubiquitin-like domain-containing protein.	0.888