(25 nodes) Metal-dependent hydrolase network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00268	Amidohydrolase. (686 aa)
	VDBG_00388	Amidohydrolase family protein. (353 aa)
	VDBG_01237	Adenosine deaminase. (365 aa)
	VDBG_01252	Cut9-interacting protein scn1. (443 aa)
	VDBG_00568	Adenosine deaminase family protein. (457 aa)
	VDBG_00648	FluG; Belongs to the glutamine synthetase family. (832 aa)
	VDBG_00866	PyrABCN. (2203 aa)
	VDBG_01512	Deoxyribonuclease tatD. (293 aa)
	VDBG_02488	Amidohydrolase family protein. (652 aa)
	VDBG_03291	Allantoinase. (548 aa)
	VDBG_02623	Uracil-5-carboxylate decarboxylase; Belongs to the metallo-dependent hydrolases superfamily. (378 aa)
	VDBG_02665	Amidohydrolase. (465 aa)
	VDBG_02703	Amidohydrolase family protein. (487 aa)
	VDBG_04190	Dipeptidase; Belongs to the metallo-dependent hydrolases superfamily. Peptidase M19 family. (473 aa)
	VDBG_03693	Urease. (573 aa)
	VDBG_05794	Adenosine deaminase. (282 aa)
	VDBG_05096	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. (929 aa)
	VDBG_06601	Amidohydrolase family protein. (440 aa)
	VDBG_07761	Adenosine deaminase. (363 aa)
	VDBG_07914	A_deaminase domain-containing protein. (599 aa)
	VDBG_08004	N-acetylglucosamine-6-phosphate deacetylase. (439 aa)
	VDBG_08412	A_deaminase domain-containing protein. (559 aa)
	VDBG_08797	Dihydroorotase. (229 aa)
	VDBG_09074	Metal dependent amidohydrolase. (476 aa)
	VDBG_09896	Guanine deaminase. (383 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00568	VDBG_01237	C9S6E8	C9S666	Adenosine deaminase family protein.	Adenosine deaminase.	0.900
VDBG_00568	VDBG_05794	C9S6E8	C9SJS1	Adenosine deaminase family protein.	Adenosine deaminase.	0.923
VDBG_00568	VDBG_07761	C9S6E8	C9SS86	Adenosine deaminase family protein.	Adenosine deaminase.	0.907
VDBG_00568	VDBG_07914	C9S6E8	C9SSN9	Adenosine deaminase family protein.	A_deaminase domain-containing protein.	0.912
VDBG_00568	VDBG_08412	C9S6E8	C9STZ1	Adenosine deaminase family protein.	A_deaminase domain-containing protein.	0.908
VDBG_00866	VDBG_03291	C9S7J6	C9SDR2	PyrABCN.	Allantoinase.	0.765
VDBG_00866	VDBG_08797	C9S7J6	C9SV72	PyrABCN.	Dihydroorotase.	0.985
VDBG_01237	VDBG_00568	C9S666	C9S6E8	Adenosine deaminase.	Adenosine deaminase family protein.	0.900
VDBG_01237	VDBG_05794	C9S666	C9SJS1	Adenosine deaminase.	Adenosine deaminase.	0.912
VDBG_01237	VDBG_07761	C9S666	C9SS86	Adenosine deaminase.	Adenosine deaminase.	0.900
VDBG_01237	VDBG_07914	C9S666	C9SSN9	Adenosine deaminase.	A_deaminase domain-containing protein.	0.900
VDBG_01237	VDBG_08412	C9S666	C9STZ1	Adenosine deaminase.	A_deaminase domain-containing protein.	0.900
VDBG_03291	VDBG_00866	C9SDR2	C9S7J6	Allantoinase.	PyrABCN.	0.765
VDBG_03291	VDBG_08797	C9SDR2	C9SV72	Allantoinase.	Dihydroorotase.	0.798
VDBG_05096	VDBG_05794	C9SJW9	C9SJS1	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.	Adenosine deaminase.	0.645
VDBG_05096	VDBG_07761	C9SJW9	C9SS86	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.	Adenosine deaminase.	0.597
VDBG_05794	VDBG_00568	C9SJS1	C9S6E8	Adenosine deaminase.	Adenosine deaminase family protein.	0.923
VDBG_05794	VDBG_01237	C9SJS1	C9S666	Adenosine deaminase.	Adenosine deaminase.	0.912
VDBG_05794	VDBG_05096	C9SJS1	C9SJW9	Adenosine deaminase.	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.	0.645
VDBG_05794	VDBG_07761	C9SJS1	C9SS86	Adenosine deaminase.	Adenosine deaminase.	0.901