49 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_09346	Hydrolase. (283 aa)
	VDBG_09770	Phosphoinositide phospholipase C. (546 aa)
	VDBG_09768	Serine/threonine-protein kinase gad8. (671 aa)
	VDBG_09728	Mitogen-activated protein kinase. (160 aa)
	VDBG_09726	Mitogen-activated protein kinase. (120 aa)
	VDBG_09307	ApbA domain-containing protein. (117 aa)
	VDBG_08818	Phosphoinositide phospholipase C. (576 aa)
	VDBG_08817	cAMP-dependent protein kinase; Belongs to the protein kinase superfamily. (442 aa)
	VDBG_08417	Periplasmic beta-glucosidase/beta-xylosidase. (624 aa)
	VDBG_07847	Abhydrolase domain-containing protein. (690 aa)
	VDBG_07678	Uncharacterized protein. (190 aa)
	VDBG_07673	Predicted protein. (266 aa)
	VDBG_07672	AB hydrolase-1 domain-containing protein. (277 aa)
	VDBG_06984	Cell division control protein. (496 aa)
	VDBG_07177	Lysophospholipase. (607 aa)
	VDBG_07029	RNA polymerase II elongator complex subunit. (343 aa)
	VDBG_07026	Uncharacterized protein. (847 aa)
	VDBG_06889	Calcium/calmodulin-dependent protein kinase kinase. (614 aa)
	VDBG_06875	Uncharacterized protein. (211 aa)
	VDBG_06873	Uncharacterized protein. (281 aa)
	VDBG_06700	Phosphodiesterase. (849 aa)
	VDBG_06393	Ribosome biogenesis protein SSF1. (462 aa)
	VDBG_05173	Got1 family protein. (139 aa)
	VDBG_05764	Serine/threonine-protein kinase ssp1. (1255 aa)
	VDBG_04398	Guanine nucleotide-binding protein alpha-3 subunit. (355 aa)
	VDBG_04887	Serine/threonine-protein kinase psk1. (521 aa)
	VDBG_04884	Serine/threonine-protein kinase sck1. (203 aa)
	VDBG_04789	Acetate non-utilizing protein. (132 aa)
	VDBG_04490	DH domain-containing protein. (719 aa)
	VDBG_04489	Uncharacterized protein. (213 aa)
	VDBG_03477	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (1048 aa)
	VDBG_04010	Uncharacterized protein. (344 aa)
	VDBG_03930	AB hydrolase-1 domain-containing protein. (387 aa)
	VDBG_03354	Phosphoinositide phospholipase C. (663 aa)
	VDBG_03012	Chitin synthase export chaperone. (296 aa)
	VDBG_01944	Lipase_3 domain-containing protein. (1141 aa)
	VDBG_01669	Rho1 guanine nucleotide exchange factor 1. (1178 aa)
	VDBG_01659	Phosphoinositide phospholipase C. (729 aa)
	VDBG_01496	UBA/TS-N domain-containing protein. (1262 aa)
	VDBG_01488	Serine/threonine-protein kinase ksg1. (851 aa)
	VDBG_02117	Mitogen-activated protein kinase. (410 aa)
	VDBG_02087	Uncharacterized protein. (143 aa)
	VDBG_01071	Developmental regulator flbA. (417 aa)
	VDBG_01070	Developmental regulator FlbA. (212 aa)
	VDBG_00617	NADH-ubiquinone oxidoreductase 21.3 kDa subunit. (194 aa)
	VDBG_00524	Guanine nucleotide-binding protein alpha-2 subunit. (354 aa)
	VDBG_00397	Uncharacterized protein. (874 aa)
	VDBG_00367	cAMP-dependent protein kinase regulatory subunit. (216 aa)
	VDBG_01175	Serine/threonine-protein kinase gad8. (507 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00367	VDBG_00397	C9S5N4	C9S5R4	cAMP-dependent protein kinase regulatory subunit.	Uncharacterized protein.	0.925
VDBG_00367	VDBG_00524	C9S5N4	C9S6A4	cAMP-dependent protein kinase regulatory subunit.	Guanine nucleotide-binding protein alpha-2 subunit.	0.511
VDBG_00367	VDBG_03477	C9S5N4	C9SFW4	cAMP-dependent protein kinase regulatory subunit.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.643
VDBG_00367	VDBG_04398	C9S5N4	C9SJC7	cAMP-dependent protein kinase regulatory subunit.	Guanine nucleotide-binding protein alpha-3 subunit.	0.511
VDBG_00367	VDBG_06700	C9S5N4	C9SP75	cAMP-dependent protein kinase regulatory subunit.	Phosphodiesterase.	0.664
VDBG_00367	VDBG_06984	C9S5N4	C9SR72	cAMP-dependent protein kinase regulatory subunit.	Cell division control protein.	0.495
VDBG_00367	VDBG_08817	C9S5N4	C9SV92	cAMP-dependent protein kinase regulatory subunit.	cAMP-dependent protein kinase; Belongs to the protein kinase superfamily.	0.986
VDBG_00367	VDBG_09307	C9S5N4	C9SWN2	cAMP-dependent protein kinase regulatory subunit.	ApbA domain-containing protein.	0.946
VDBG_00397	VDBG_00367	C9S5R4	C9S5N4	Uncharacterized protein.	cAMP-dependent protein kinase regulatory subunit.	0.925
VDBG_00397	VDBG_06700	C9S5R4	C9SP75	Uncharacterized protein.	Phosphodiesterase.	0.771
VDBG_00524	VDBG_00367	C9S6A4	C9S5N4	Guanine nucleotide-binding protein alpha-2 subunit.	cAMP-dependent protein kinase regulatory subunit.	0.511
VDBG_00524	VDBG_01070	C9S6A4	C9S8Y8	Guanine nucleotide-binding protein alpha-2 subunit.	Developmental regulator FlbA.	0.869
VDBG_00524	VDBG_01071	C9S6A4	C9S8Y9	Guanine nucleotide-binding protein alpha-2 subunit.	Developmental regulator flbA.	0.869
VDBG_00524	VDBG_02087	C9S6A4	C9S9B5	Guanine nucleotide-binding protein alpha-2 subunit.	Uncharacterized protein.	0.704
VDBG_00524	VDBG_02117	C9S6A4	C9S9E5	Guanine nucleotide-binding protein alpha-2 subunit.	Mitogen-activated protein kinase.	0.457
VDBG_00524	VDBG_06700	C9S6A4	C9SP75	Guanine nucleotide-binding protein alpha-2 subunit.	Phosphodiesterase.	0.662
VDBG_00524	VDBG_06984	C9S6A4	C9SR72	Guanine nucleotide-binding protein alpha-2 subunit.	Cell division control protein.	0.452
VDBG_00524	VDBG_08817	C9S6A4	C9SV92	Guanine nucleotide-binding protein alpha-2 subunit.	cAMP-dependent protein kinase; Belongs to the protein kinase superfamily.	0.458
VDBG_00524	VDBG_09726	C9S6A4	C9SXV1	Guanine nucleotide-binding protein alpha-2 subunit.	Mitogen-activated protein kinase.	0.635
VDBG_00524	VDBG_09728	C9S6A4	C9SXV3	Guanine nucleotide-binding protein alpha-2 subunit.	Mitogen-activated protein kinase.	0.635