13 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_08212	CIA30 family protein. (233 aa)
	VDBG_08213	Uncharacterized protein. (98 aa)
	VDBG_03557	40S ribosomal protein S27a. (153 aa)
	VDBG_08345	Uncharacterized protein. (246 aa)
	VDBG_08639	RING-box protein. (119 aa)
	VDBG_08817	cAMP-dependent protein kinase; Belongs to the protein kinase superfamily. (442 aa)
	VDBG_09137	Uncharacterized protein. (479 aa)
	VDBG_09307	ApbA domain-containing protein. (117 aa)
	VDBG_00367	cAMP-dependent protein kinase regulatory subunit. (216 aa)
	VDBG_00397	Uncharacterized protein. (874 aa)
	VDBG_03077	PDCD2_C domain-containing protein. (433 aa)
	VDBG_02566	Integral membrane protein. (575 aa)
	VDBG_05813	Uncharacterized protein. (143 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00367	VDBG_00397	C9S5N4	C9S5R4	cAMP-dependent protein kinase regulatory subunit.	Uncharacterized protein.	0.925
VDBG_00367	VDBG_08817	C9S5N4	C9SV92	cAMP-dependent protein kinase regulatory subunit.	cAMP-dependent protein kinase; Belongs to the protein kinase superfamily.	0.986
VDBG_00367	VDBG_09307	C9S5N4	C9SWN2	cAMP-dependent protein kinase regulatory subunit.	ApbA domain-containing protein.	0.946
VDBG_00397	VDBG_00367	C9S5R4	C9S5N4	Uncharacterized protein.	cAMP-dependent protein kinase regulatory subunit.	0.925
VDBG_02566	VDBG_08639	C9SDX1	C9SUR4	Integral membrane protein.	RING-box protein.	0.632
VDBG_03557	VDBG_08639	C9SGA8	C9SUR4	40S ribosomal protein S27a.	RING-box protein.	0.769
VDBG_08212	VDBG_08639	C9STI7	C9SUR4	CIA30 family protein.	RING-box protein.	0.769
VDBG_08213	VDBG_08639	C9STI8	C9SUR4	Uncharacterized protein.	RING-box protein.	0.769
VDBG_08639	VDBG_02566	C9SUR4	C9SDX1	RING-box protein.	Integral membrane protein.	0.632
VDBG_08639	VDBG_03557	C9SUR4	C9SGA8	RING-box protein.	40S ribosomal protein S27a.	0.769
VDBG_08639	VDBG_08212	C9SUR4	C9STI7	RING-box protein.	CIA30 family protein.	0.769
VDBG_08639	VDBG_08213	C9SUR4	C9STI8	RING-box protein.	Uncharacterized protein.	0.769
VDBG_08817	VDBG_00367	C9SV92	C9S5N4	cAMP-dependent protein kinase; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase regulatory subunit.	0.986
VDBG_09307	VDBG_00367	C9SWN2	C9S5N4	ApbA domain-containing protein.	cAMP-dependent protein kinase regulatory subunit.	0.946