(18 nodes) CDC42 GTPase cycle network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_01346	Rho GDP dissociation inhibitor. (94 aa)
	VDBG_02860	PB1 domain-containing protein. (267 aa)
	VDBG_02010	Beta-chimaerin. (721 aa)
	VDBG_01496	UBA/TS-N domain-containing protein. (1262 aa)
	VDBG_00834	Rho-type GTPase-activating protein. (1215 aa)
	VDBG_06684	Rho-GTPase-activating protein. (813 aa)
	VDBG_06873	Uncharacterized protein. (281 aa)
	VDBG_06875	Uncharacterized protein. (211 aa)
	VDBG_07716	Uncharacterized protein. (135 aa)
	VDBG_08129	Uncharacterized protein. (348 aa)
	VDBG_08700	Cell division control protein. (185 aa)
	VDBG_09576	Uncharacterized protein. (134 aa)
	VDBG_05039	GH131_N domain-containing protein. (294 aa)
	VDBG_05973	RSP. (938 aa)
	VDBG_05004	N-chimaerin. (1429 aa)
	VDBG_02861	Rho guanine nucleotide exchange factor scd1. (636 aa)
	VDBG_04489	Uncharacterized protein. (213 aa)
	VDBG_04490	DH domain-containing protein. (719 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00834	VDBG_01346	C9S7G4	C9S7E1	Rho-type GTPase-activating protein.	Rho GDP dissociation inhibitor.	0.627
VDBG_00834	VDBG_02010	C9S7G4	C9SC17	Rho-type GTPase-activating protein.	Beta-chimaerin.	0.994
VDBG_00834	VDBG_02860	C9S7G4	C9SCD6	Rho-type GTPase-activating protein.	PB1 domain-containing protein.	0.945
VDBG_00834	VDBG_02861	C9S7G4	C9SCD7	Rho-type GTPase-activating protein.	Rho guanine nucleotide exchange factor scd1.	0.945
VDBG_00834	VDBG_04489	C9S7G4	C9SHF7	Rho-type GTPase-activating protein.	Uncharacterized protein.	0.945
VDBG_00834	VDBG_04490	C9S7G4	C9SHF8	Rho-type GTPase-activating protein.	DH domain-containing protein.	0.945
VDBG_00834	VDBG_05004	C9S7G4	C9SIX2	Rho-type GTPase-activating protein.	N-chimaerin.	0.983
VDBG_00834	VDBG_06684	C9S7G4	C9SP59	Rho-type GTPase-activating protein.	Rho-GTPase-activating protein.	0.790
VDBG_00834	VDBG_08700	C9S7G4	C9SUX5	Rho-type GTPase-activating protein.	Cell division control protein.	0.999
VDBG_01346	VDBG_00834	C9S7E1	C9S7G4	Rho GDP dissociation inhibitor.	Rho-type GTPase-activating protein.	0.627
VDBG_01346	VDBG_08700	C9S7E1	C9SUX5	Rho GDP dissociation inhibitor.	Cell division control protein.	0.974
VDBG_01496	VDBG_08700	C9SAB0	C9SUX5	UBA/TS-N domain-containing protein.	Cell division control protein.	0.459
VDBG_02010	VDBG_00834	C9SC17	C9S7G4	Beta-chimaerin.	Rho-type GTPase-activating protein.	0.994
VDBG_02010	VDBG_05004	C9SC17	C9SIX2	Beta-chimaerin.	N-chimaerin.	0.456
VDBG_02010	VDBG_06684	C9SC17	C9SP59	Beta-chimaerin.	Rho-GTPase-activating protein.	0.491
VDBG_02010	VDBG_08700	C9SC17	C9SUX5	Beta-chimaerin.	Cell division control protein.	0.812
VDBG_02860	VDBG_00834	C9SCD6	C9S7G4	PB1 domain-containing protein.	Rho-type GTPase-activating protein.	0.945
VDBG_02860	VDBG_02861	C9SCD6	C9SCD7	PB1 domain-containing protein.	Rho guanine nucleotide exchange factor scd1.	0.900
VDBG_02860	VDBG_05004	C9SCD6	C9SIX2	PB1 domain-containing protein.	N-chimaerin.	0.410
VDBG_02860	VDBG_08700	C9SCD6	C9SUX5	PB1 domain-containing protein.	Cell division control protein.	0.904