27 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_02566	Integral membrane protein. (575 aa)
	VDBG_01677	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (171 aa)
	VDBG_02286	Dynein light intermediate chain. (516 aa)
	VDBG_00168	Predicted protein. (53 aa)
	VDBG_00153	Mitochondrial import receptor subunit tom-40. (352 aa)
	VDBG_00925	Mitochondrial import receptor subunit tom-20. (178 aa)
	VDBG_00899	DJ-1_PfpI domain-containing protein. (288 aa)
	VDBG_00669	ZZ type zinc finger domain-containing protein. (849 aa)
	VDBG_00665	Mitochondrial proteins import receptor. (622 aa)
	VDBG_00549	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. (250 aa)
	VDBG_08212	CIA30 family protein. (233 aa)
	VDBG_08213	Uncharacterized protein. (98 aa)
	VDBG_08918	Mitochondrial outer membrane protein involved in mitochondrial shape. (440 aa)
	VDBG_07514	USP domain-containing protein. (475 aa)
	VDBG_10062	Ubiquitin-conjugating enzyme variant MMS2. (140 aa)
	VDBG_09293	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (340 aa)
	VDBG_09277	Uncharacterized protein. (191 aa)
	VDBG_09267	Fungal specific transcription factor domain-containing protein. (851 aa)
	VDBG_06833	Serine/threonine-protein kinase Tel1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability; Belongs to the PI3/PI4-kinase family. ATM subfamily. (2923 aa)
	VDBG_06688	MAP kinase-activated protein kinase. (745 aa)
	VDBG_06132	Peroxisomal targeting signal receptor. (74 aa)
	VDBG_03801	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily. (341 aa)
	VDBG_08165	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy. (145 aa)
	VDBG_07831	Transmembrane GTPase fzo1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (911 aa)
	VDBG_07760	Uncharacterized protein. (206 aa)
	VDBG_03557	40S ribosomal protein S27a. (153 aa)
	VDBG_03997	Autophagy-related protein. (93 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00153	VDBG_00168	C9S8W9	C9S913	Mitochondrial import receptor subunit tom-40.	Predicted protein.	0.996
VDBG_00153	VDBG_00665	C9S8W9	C9S6U6	Mitochondrial import receptor subunit tom-40.	Mitochondrial proteins import receptor.	0.984
VDBG_00153	VDBG_00925	C9S8W9	C9S7T1	Mitochondrial import receptor subunit tom-40.	Mitochondrial import receptor subunit tom-20.	0.993
VDBG_00153	VDBG_07760	C9S8W9	C9SS85	Mitochondrial import receptor subunit tom-40.	Uncharacterized protein.	0.999
VDBG_00153	VDBG_07831	C9S8W9	C9SSF6	Mitochondrial import receptor subunit tom-40.	Transmembrane GTPase fzo1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.520
VDBG_00168	VDBG_00153	C9S913	C9S8W9	Predicted protein.	Mitochondrial import receptor subunit tom-40.	0.996
VDBG_00168	VDBG_00665	C9S913	C9S6U6	Predicted protein.	Mitochondrial proteins import receptor.	0.958
VDBG_00168	VDBG_00925	C9S913	C9S7T1	Predicted protein.	Mitochondrial import receptor subunit tom-20.	0.987
VDBG_00168	VDBG_07760	C9S913	C9SS85	Predicted protein.	Uncharacterized protein.	0.999
VDBG_00168	VDBG_08918	C9S913	C9SVJ3	Predicted protein.	Mitochondrial outer membrane protein involved in mitochondrial shape.	0.542
VDBG_00549	VDBG_00669	C9S6C9	C9S6V0	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	ZZ type zinc finger domain-containing protein.	0.858
VDBG_00549	VDBG_00925	C9S6C9	C9S7T1	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	Mitochondrial import receptor subunit tom-20.	0.424
VDBG_00549	VDBG_03997	C9S6C9	C9SFA2	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	Autophagy-related protein.	0.948
VDBG_00549	VDBG_06688	C9S6C9	C9SP63	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	MAP kinase-activated protein kinase.	0.983
VDBG_00549	VDBG_07831	C9S6C9	C9SSF6	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	Transmembrane GTPase fzo1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.834
VDBG_00549	VDBG_08165	C9S6C9	C9STE0	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.999
VDBG_00665	VDBG_00153	C9S6U6	C9S8W9	Mitochondrial proteins import receptor.	Mitochondrial import receptor subunit tom-40.	0.984
VDBG_00665	VDBG_00168	C9S6U6	C9S913	Mitochondrial proteins import receptor.	Predicted protein.	0.958
VDBG_00665	VDBG_00925	C9S6U6	C9S7T1	Mitochondrial proteins import receptor.	Mitochondrial import receptor subunit tom-20.	0.996
VDBG_00665	VDBG_07514	C9S6U6	C9SRI9	Mitochondrial proteins import receptor.	USP domain-containing protein.	0.701