16 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_09948	Heat shock protein STI1. (584 aa)
	VDBG_00306	Ras-2. (182 aa)
	VDBG_00486	Ras GTPase-activating protein gap-1. (1264 aa)
	VDBG_01373	GTP-binding protein RHO1. (206 aa)
	VDBG_01093	Ras-1. (170 aa)
	VDBG_02102	GTPase HRas. (235 aa)
	VDBG_02308	GTP-binding protein RHO3. (217 aa)
	VDBG_02341	Thioredoxin domain-containing protein. (202 aa)
	VDBG_01544	GTP-binding protein rho4. (229 aa)
	VDBG_04258	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (521 aa)
	VDBG_03787	Peptide hydrolase; Belongs to the peptidase M28 family. (731 aa)
	VDBG_04982	PITH domain-containing protein. (129 aa)
	VDBG_05269	GTP-binding protein RHO1. (129 aa)
	VDBG_05368	RNA-binding protein rsd1. (227 aa)
	VDBG_05714	Membrane protein involved in vacuolar protein sorting. (717 aa)
	VDBG_07350	WD_REPEATS_REGION domain-containing protein. (840 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00306	VDBG_00486	C9S599	C9S640	Ras-2.	Ras GTPase-activating protein gap-1.	0.774
VDBG_00306	VDBG_01093	C9S599	C9S981	Ras-2.	Ras-1.	0.904
VDBG_00486	VDBG_00306	C9S640	C9S599	Ras GTPase-activating protein gap-1.	Ras-2.	0.774
VDBG_00486	VDBG_01093	C9S640	C9S981	Ras GTPase-activating protein gap-1.	Ras-1.	0.774
VDBG_00486	VDBG_01373	C9S640	C9S7P7	Ras GTPase-activating protein gap-1.	GTP-binding protein RHO1.	0.502
VDBG_00486	VDBG_01544	C9S640	C9SAI7	Ras GTPase-activating protein gap-1.	GTP-binding protein rho4.	0.502
VDBG_00486	VDBG_02102	C9S640	C9S9D0	Ras GTPase-activating protein gap-1.	GTPase HRas.	0.774
VDBG_00486	VDBG_02308	C9S640	C9S9Y6	Ras GTPase-activating protein gap-1.	GTP-binding protein RHO3.	0.502
VDBG_00486	VDBG_05269	C9S640	C9SKE2	Ras GTPase-activating protein gap-1.	GTP-binding protein RHO1.	0.502
VDBG_01093	VDBG_00306	C9S981	C9S599	Ras-1.	Ras-2.	0.904
VDBG_01093	VDBG_00486	C9S981	C9S640	Ras-1.	Ras GTPase-activating protein gap-1.	0.774
VDBG_01093	VDBG_01373	C9S981	C9S7P7	Ras-1.	GTP-binding protein RHO1.	0.483
VDBG_01093	VDBG_01544	C9S981	C9SAI7	Ras-1.	GTP-binding protein rho4.	0.413
VDBG_01373	VDBG_00486	C9S7P7	C9S640	GTP-binding protein RHO1.	Ras GTPase-activating protein gap-1.	0.502
VDBG_01373	VDBG_01093	C9S7P7	C9S981	GTP-binding protein RHO1.	Ras-1.	0.483
VDBG_01373	VDBG_01544	C9S7P7	C9SAI7	GTP-binding protein RHO1.	GTP-binding protein rho4.	0.413
VDBG_01373	VDBG_02102	C9S7P7	C9S9D0	GTP-binding protein RHO1.	GTPase HRas.	0.419
VDBG_01373	VDBG_05368	C9S7P7	C9SKP1	GTP-binding protein RHO1.	RNA-binding protein rsd1.	0.418
VDBG_01373	VDBG_09948	C9S7P7	C9SYH3	GTP-binding protein RHO1.	Heat shock protein STI1.	0.458
VDBG_01544	VDBG_00486	C9SAI7	C9S640	GTP-binding protein rho4.	Ras GTPase-activating protein gap-1.	0.502