STRINGSTRING
VDBG_07591 VDBG_07591 VDBG_04614 VDBG_04614 VDBG_03118 VDBG_03118 VDBG_01680 VDBG_01680 VDBG_00078 VDBG_00078 VDBG_01464 VDBG_01464 VDBG_01219 VDBG_01219 VDBG_10193 VDBG_10193 VDBG_09261 VDBG_09261 VDBG_09066 VDBG_09066 VDBG_07641 VDBG_07641 VDBG_05735 VDBG_05735
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_07591Alpha-ketoglutarate-dependent sulfonate dioxygenase. (386 aa)
VDBG_04614Alpha-ketoglutarate dependent xanthine dioxygenase. (376 aa)
VDBG_03118Alpha-ketoglutarate-dependent sulfonate dioxygenase. (383 aa)
VDBG_01680Taurine catabolism dioxygenase TauD. (412 aa)
VDBG_00078Trimethyllysine dioxygenase. (441 aa)
VDBG_01464Alpha-ketoglutarate-dependent taurine dioxygenase. (257 aa)
VDBG_01219Taurine catabolism dioxygenase TauD. (416 aa)
VDBG_10193Taurine catabolism dioxygenase TauD. (405 aa)
VDBG_09261Alpha-ketoglutarate-dependent sulfonate dioxygenase. (378 aa)
VDBG_09066Taurine catabolism dioxygenase TauD. (393 aa)
VDBG_07641Predicted protein. (364 aa)
VDBG_05735Alpha-ketoglutarate-dependent sulfonate dioxygenase. (384 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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