(7 nodes) Snf7 network (Verticillium alfalfae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_08324	Uncharacterized protein. (361 aa)
	VDBG_07830	DOA4-independent degradation protein. (201 aa)
	VDBG_02863	Charged multivesicular body protein. (214 aa)
	VDBG_05235	Vacuolar protein-sorting-associated protein. (228 aa)
	VDBG_00559	Vacuolar-sorting protein snf7. (223 aa)
	VDBG_03677	Charged multivesicular body protein. (198 aa)
	VDBG_01917	Uncharacterized protein. (205 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00559	VDBG_01917	C9S6D9	C9SBS4	Vacuolar-sorting protein snf7.	Uncharacterized protein.	0.955
VDBG_00559	VDBG_02863	C9S6D9	C9SCD9	Vacuolar-sorting protein snf7.	Charged multivesicular body protein.	0.980
VDBG_00559	VDBG_03677	C9S6D9	C9SGU6	Vacuolar-sorting protein snf7.	Charged multivesicular body protein.	0.997
VDBG_00559	VDBG_05235	C9S6D9	C9SKA8	Vacuolar-sorting protein snf7.	Vacuolar protein-sorting-associated protein.	0.998
VDBG_00559	VDBG_07830	C9S6D9	C9SSF5	Vacuolar-sorting protein snf7.	DOA4-independent degradation protein.	0.998
VDBG_00559	VDBG_08324	C9S6D9	C9STQ3	Vacuolar-sorting protein snf7.	Uncharacterized protein.	0.996
VDBG_01917	VDBG_00559	C9SBS4	C9S6D9	Uncharacterized protein.	Vacuolar-sorting protein snf7.	0.955
VDBG_01917	VDBG_02863	C9SBS4	C9SCD9	Uncharacterized protein.	Charged multivesicular body protein.	0.951
VDBG_01917	VDBG_03677	C9SBS4	C9SGU6	Uncharacterized protein.	Charged multivesicular body protein.	0.731
VDBG_01917	VDBG_05235	C9SBS4	C9SKA8	Uncharacterized protein.	Vacuolar protein-sorting-associated protein.	0.954
VDBG_01917	VDBG_07830	C9SBS4	C9SSF5	Uncharacterized protein.	DOA4-independent degradation protein.	0.999
VDBG_01917	VDBG_08324	C9SBS4	C9STQ3	Uncharacterized protein.	Uncharacterized protein.	0.656
VDBG_02863	VDBG_00559	C9SCD9	C9S6D9	Charged multivesicular body protein.	Vacuolar-sorting protein snf7.	0.980
VDBG_02863	VDBG_01917	C9SCD9	C9SBS4	Charged multivesicular body protein.	Uncharacterized protein.	0.951
VDBG_02863	VDBG_03677	C9SCD9	C9SGU6	Charged multivesicular body protein.	Charged multivesicular body protein.	0.871
VDBG_02863	VDBG_05235	C9SCD9	C9SKA8	Charged multivesicular body protein.	Vacuolar protein-sorting-associated protein.	0.935
VDBG_02863	VDBG_07830	C9SCD9	C9SSF5	Charged multivesicular body protein.	DOA4-independent degradation protein.	0.976
VDBG_02863	VDBG_08324	C9SCD9	C9STQ3	Charged multivesicular body protein.	Uncharacterized protein.	0.830
VDBG_03677	VDBG_00559	C9SGU6	C9S6D9	Charged multivesicular body protein.	Vacuolar-sorting protein snf7.	0.997
VDBG_03677	VDBG_01917	C9SGU6	C9SBS4	Charged multivesicular body protein.	Uncharacterized protein.	0.731