92 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_03973	Multidrug resistance protein. (1368 aa)
	VDBG_01226	Brefeldin A resistance protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1575 aa)
	VDBG_01236	Multidrug resistance protein CDR1; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1495 aa)
	VDBG_00910	Dynein heavy chain. (3880 aa)
	VDBG_00967	ATP-binding cassette sub-family F member 3. (679 aa)
	VDBG_00082	ATP-dependent RNA helicase DHX8. (1035 aa)
	VDBG_00160	ATP-binding cassette sub-family B member 5. (1226 aa)
	VDBG_01074	Origin recognition complex subunit 4. (869 aa)
	VDBG_00185	Replication factor C subunit 4. (361 aa)
	VDBG_00234	Paraplegin. (841 aa)
	VDBG_02279	Heavy metal tolerance protein. (671 aa)
	VDBG_02292	ATP-binding cassette sub-family B member 5. (1045 aa)
	VDBG_02430	Multidrug resistance protein. (1340 aa)
	VDBG_02440	Brefeldin A resistance protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1408 aa)
	VDBG_01528	Cell division protease ftsH. (718 aa)
	VDBG_01613	AFG2. (609 aa)
	VDBG_02914	ATPase WRNIP1. (458 aa)
	VDBG_02941	Canalicular multispecific organic anion transporter 1. (1404 aa)
	VDBG_03096	Opaque-specific ABC transporter CDR3; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1256 aa)
	VDBG_03116	Iron-sulfur clusters transporter ATM1. (685 aa)
	VDBG_03185	ATP-binding cassette sub-family G member 2. (528 aa)
	VDBG_03269	Vacuolar protein sorting-associated protein; Belongs to the AAA ATPase family. (404 aa)
	VDBG_03317	Canalicular multispecific organic anion transporter 1. (1472 aa)
	VDBG_02572	Multidrug resistance protein. (1249 aa)
	VDBG_03361	CCR4-Not complex subunit Caf16. (282 aa)
	VDBG_03404	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (517 aa)
	VDBG_03407	ATP-dependent Clp protease ATP-binding subunit clpX. (583 aa)
	VDBG_03411	Spastin. (1032 aa)
	VDBG_02679	Multidrug resistance protein CDR1; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1166 aa)
	VDBG_03879	ATP-binding cassette sub-family G member 2. (1081 aa)
	VDBG_03939	Multidrug resistance protein CDR1; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1313 aa)
	VDBG_04049	Mitochondrial chaperone BCS1; Belongs to the AAA ATPase family. (637 aa)
	VDBG_03459	ATP-dependent permease PDR10. (1333 aa)
	VDBG_04148	Multidrug resistance-associated protein. (1442 aa)
	VDBG_03629	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family. (421 aa)
	VDBG_03678	Ribosome biogenesis ATPase RIX7; Belongs to the AAA ATPase family. (507 aa)
	VDBG_03798	ATP-dependent bile acid permease. (1204 aa)
	VDBG_03839	Peroxisomal long-chain fatty acid import protein. (845 aa)
	VDBG_04647	Pre-mRNA-splicing helicase BRR2. (2194 aa)
	MCM7	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (838 aa)
	VDBG_04729	26S protease regulatory subunit S10B; Belongs to the AAA ATPase family. (361 aa)
	VDBG_04825	Heat shock protein. (744 aa)
	VDBG_04905	26S protease regulatory subunit 7; Belongs to the AAA ATPase family. (439 aa)
	VDBG_04926	Multidrug resistance protein. (744 aa)
	VDBG_04326	DNA helicase; Belongs to the MCM family. (869 aa)
	VDBG_04340	ATPase family AAA domain-containing protein; Belongs to the AAA ATPase family. (409 aa)
	VDBG_04401	Lon protease homolog; Belongs to the peptidase S16 family. (841 aa)
	VDBG_04420	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (355 aa)
	VDBG_04441	ATP-binding cassette sub-family E member 1. (335 aa)
	VDBG_05745	ATP-binding cassette sub-family G member 5. (625 aa)
	VDBG_05084	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (679 aa)
	VDBG_05161	ATP-dependent DNA helicase MER3. (709 aa)
	VDBG_05437	Vesicular-fusion protein SEC18. (857 aa)
	VDBG_05514	DNA repair protein RAD57. (459 aa)
	VDBG_05704	Replication factor C subunit 3. (391 aa)
	VDBG_05717	ATP-binding cassette sub-family D member 1. (625 aa)
	VDBG_05723	AAA domain-containing protein. (711 aa)
	VDBG_05916	Cell cycle checkpoint protein RAD17. (877 aa)
	VDBG_05923	Multidrug resistance protein CDR1; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1434 aa)
	VDBG_05952	Peroxisomal biogenesis factor 6; Belongs to the AAA ATPase family. (413 aa)
	VDBG_06085	Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16. (1047 aa)
	VDBG_06182	AAA domain-containing protein. (678 aa)
	VDBG_06523	Leptomycin B resistance protein pmd1. (1002 aa)
	VDBG_06544	ATP-dependent bile acid permease. (1555 aa)
	VDBG_06634	Multidrug resistance protein. (1013 aa)
	VDBG_06762	Heat shock protein HSP98; Belongs to the ClpA/ClpB family. (921 aa)
	VDBG_07032	Heavy metal tolerance protein. (1029 aa)
	VDBG_07571	Canalicular multispecific organic anion transporter 1. (1387 aa)
	VDBG_07711	Multidrug resistance protein CDR1; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1445 aa)
	VDBG_07728	AAA domain-containing protein. (1150 aa)
	VDBG_08182	GCN20. (739 aa)
	VDBG_08199	Mitochondrial chaperone BCS1; Belongs to the AAA ATPase family. (649 aa)
	VDBG_08271	Chromosome transmission fidelity protein. (945 aa)
	VDBG_08341	Uridine kinase. (448 aa)
	VDBG_08366	ABC transporter domain-containing protein. (416 aa)
	VDBG_08385	Canalicular multispecific organic anion transporter 2. (1166 aa)
	VDBG_08466	Elongation factor 3. (1003 aa)
	VDBG_08525	ABC transporter CDR4; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (389 aa)
	VDBG_08690	Midasin. (3777 aa)
	VDBG_08726	Metal resistance protein YCF1. (1583 aa)
	VDBG_08876	ATPase family AAA domain-containing protein 2B. (1565 aa)
	VDBG_08974	26S protease regulatory subunit 4. (372 aa)
	VDBG_09049	CbbX. (2003 aa)
	VDBG_09104	Mitochondrial chaperone BCS1; Belongs to the AAA ATPase family. (497 aa)
	VDBG_09149	ATP-binding cassette sub-family A member 9. (1590 aa)
	VDBG_09188	Brefeldin A resistance protein; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (667 aa)
	VDBG_09583	Multidrug resistance protein. (1286 aa)
	VDBG_09347	ATP-dependent permease MDL2. (693 aa)
	VDBG_09473	ATP-binding cassette sub-family F member 2. (632 aa)
	VDBG_09515	26S protease regulatory subunit 4; Belongs to the AAA ATPase family. (439 aa)
	VDBG_09683	SAP1; Belongs to the AAA ATPase family. (783 aa)
	VDBG_10217	Cell division cycle protein; Belongs to the AAA ATPase family. (634 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MCM7	VDBG_00185	C9SI14	C9S930	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	Replication factor C subunit 4.	0.742
MCM7	VDBG_01074	C9SI14	C9S8Z2	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	Origin recognition complex subunit 4.	0.997
MCM7	VDBG_03404	C9SI14	C9SE48	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.505
MCM7	VDBG_04326	C9SI14	C9SJ55	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	DNA helicase; Belongs to the MCM family.	0.999
MCM7	VDBG_04420	C9SI14	C9SJE9	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.488
MCM7	VDBG_05084	C9SI14	C9SJV7	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.998
MCM7	VDBG_05704	C9SI14	C9SLM7	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	Replication factor C subunit 3.	0.815
MCM7	VDBG_05916	C9SI14	C9SLZ2	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	Cell cycle checkpoint protein RAD17.	0.462
MCM7	VDBG_07728	C9SI14	C9SS53	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	AAA domain-containing protein.	0.473
MCM7	VDBG_08271	C9SI14	C9STK0	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	Chromosome transmission fidelity protein.	0.545
VDBG_00082	VDBG_03678	C9S8L4	C9SGU7	ATP-dependent RNA helicase DHX8.	Ribosome biogenesis ATPase RIX7; Belongs to the AAA ATPase family.	0.441
VDBG_00082	VDBG_08466	C9S8L4	C9SU45	ATP-dependent RNA helicase DHX8.	Elongation factor 3.	0.992
VDBG_00185	MCM7	C9S930	C9SI14	Replication factor C subunit 4.	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	0.742
VDBG_00185	VDBG_04326	C9S930	C9SJ55	Replication factor C subunit 4.	DNA helicase; Belongs to the MCM family.	0.740
VDBG_00185	VDBG_04420	C9S930	C9SJE9	Replication factor C subunit 4.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.709
VDBG_00185	VDBG_05514	C9S930	C9SL37	Replication factor C subunit 4.	DNA repair protein RAD57.	0.571
VDBG_00185	VDBG_05704	C9S930	C9SLM7	Replication factor C subunit 4.	Replication factor C subunit 3.	0.999
VDBG_00185	VDBG_05916	C9S930	C9SLZ2	Replication factor C subunit 4.	Cell cycle checkpoint protein RAD17.	0.999
VDBG_00185	VDBG_07728	C9S930	C9SS53	Replication factor C subunit 4.	AAA domain-containing protein.	0.977
VDBG_00185	VDBG_08271	C9S930	C9STK0	Replication factor C subunit 4.	Chromosome transmission fidelity protein.	0.982