STRINGSTRING
VDBG_00246 VDBG_00246 VDBG_00286 VDBG_00286 VDBG_02883 VDBG_02883 VDBG_03079 VDBG_03079 VDBG_03289 VDBG_03289 VDBG_03358 VDBG_03358 VDBG_03368 VDBG_03368 VDBG_03370 VDBG_03370 VDBG_03737 VDBG_03737 VDBG_04354 VDBG_04354 VDBG_05337 VDBG_05337 VDBG_05935 VDBG_05935 VDBG_08024 VDBG_08024 VDBG_08198 VDBG_08198 VDBG_08297 VDBG_08297 VDBG_08390 VDBG_08390 VDBG_08631 VDBG_08631 VDBG_09884 VDBG_09884
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00246Farnesyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. (346 aa)
VDBG_00286Geranylgeranyl pyrophosphate synthetase. (151 aa)
VDBG_02883Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family. (412 aa)
VDBG_03079Prenylcysteine oxidase. (555 aa)
VDBG_03289Decaprenyl-diphosphate synthase subunit 1; Belongs to the FPP/GGPP synthase family. (451 aa)
VDBG_03358CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (371 aa)
VDBG_03368CaaX farnesyltransferase alpha subunit Ram2. (282 aa)
VDBG_03370Mevalonate kinase; Catalyzes the phosphorylation of mevalonate to mevalonate 5- phosphate, a key step in isoprenoid and cholesterol biosynthesis. Belongs to the GHMP kinase family. Mevalonate kinase subfamily. (445 aa)
VDBG_03737Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa)
VDBG_04354Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (430 aa)
VDBG_05337Alkyl transferase; Belongs to the UPP synthase family. (366 aa)
VDBG_05935Open reading frame. (332 aa)
VDBG_08024Farnesyltransferase subunit beta. (408 aa)
VDBG_08198Hydroxymethylglutaryl-CoA synthase. (317 aa)
VDBG_08297Isopentenyl-diphosphate Delta-isomerase. (258 aa)
VDBG_08390Phosphomevalonate kinase; Belongs to the GHMP kinase family. Mevalonate kinase subfamily. (439 aa)
VDBG_08631CAAX prenyl protease. (303 aa)
VDBG_098843-hydroxy-3-methylglutaryl coenzyme A reductase. (1173 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.