STRINGSTRING
VDBG_00239 VDBG_00239 VDBG_00330 VDBG_00330 VDBG_00356 VDBG_00356 VDBG_00052 VDBG_00052 VDBG_00185 VDBG_00185 VDBG_03075 VDBG_03075 VDBG_03087 VDBG_03087 VDBG_03346 VDBG_03346 VDBG_03362 VDBG_03362 VDBG_03988 VDBG_03988 FEN1 FEN1 VDBG_04264 VDBG_04264 VDBG_04551 VDBG_04551 MCM7 MCM7 VDBG_04775 VDBG_04775 VDBG_04326 VDBG_04326 VDBG_05408 VDBG_05408 VDBG_05409 VDBG_05409 VDBG_05542 VDBG_05542 VDBG_05572 VDBG_05572 VDBG_05704 VDBG_05704 VDBG_07009 VDBG_07009 VDBG_07512 VDBG_07512 VDBG_07525 VDBG_07525 VDBG_08137 VDBG_08137 VDBG_08292 VDBG_08292 VDBG_08336 VDBG_08336 VDBG_08337 VDBG_08337 VDBG_08697 VDBG_08697 VDBG_09397 VDBG_09397
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00239DNA replication licensing factor mcm5; Belongs to the MCM family. (638 aa)
VDBG_00330DNA polymerase epsilon subunit B. (811 aa)
VDBG_00356Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (609 aa)
VDBG_00052DNA polymerase. (1055 aa)
VDBG_00185Replication factor C subunit 4. (361 aa)
VDBG_03075DNA ligase. (708 aa)
VDBG_03087DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2076 aa)
VDBG_03346DNA primase; Belongs to the eukaryotic-type primase small subunit family. (495 aa)
VDBG_03362DNA polymerase subunit delta-2. (497 aa)
VDBG_03988Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (328 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (308 aa)
VDBG_04264DNA replication licensing factor mcm2; Belongs to the MCM family. (699 aa)
VDBG_04551DNA helicase; Belongs to the MCM family. (1010 aa)
MCM7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (838 aa)
VDBG_04775Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (239 aa)
VDBG_04326DNA helicase; Belongs to the MCM family. (869 aa)
VDBG_05408Replication factor C subunit 5. (354 aa)
VDBG_05409Replication factor C subunit 1. (342 aa)
VDBG_05542Uncharacterized protein. (193 aa)
VDBG_05572Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (264 aa)
VDBG_05704Replication factor C subunit 3. (391 aa)
VDBG_07009DNA polymerase. (1231 aa)
VDBG_07512DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (593 aa)
VDBG_07525Uncharacterized protein. (109 aa)
VDBG_08137DNA replication ATP-dependent helicase dna2. (1446 aa)
VDBG_08292Replication factor-A protein. (181 aa)
VDBG_08336Uncharacterized protein. (159 aa)
VDBG_08337DNA helicase; Belongs to the MCM family. (751 aa)
VDBG_08697DNA ligase. (893 aa)
VDBG_09397DNA primase large subunit. (413 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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