34 items (Verticillium alfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDBG_00502	Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (254 aa)
	VDBG_01411	26S protease regulatory subunit 6A-B. (231 aa)
	VDBG_01441	Predicted protein. (92 aa)
	VDBG_00101	Proteasome subunit alpha type. (269 aa)
	VDBG_02265	26S proteasome regulatory subunit RPN5. (492 aa)
	VDBG_02450	Proteasome component PRE3. (364 aa)
	VDBG_02830	Proteasome endopeptidase complex. (283 aa)
	VDBG_03999	26S proteasome regulatory subunit rpn-8. (351 aa)
	VDBG_04152	Proteasome subunit beta. (182 aa)
	VDBG_03610	26S proteasome non-ATPase regulatory subunit 3. (553 aa)
	VDBG_03629	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family. (421 aa)
	VDBG_04729	26S protease regulatory subunit S10B; Belongs to the AAA ATPase family. (361 aa)
	VDBG_04731	Proteasome subunit beta; Belongs to the peptidase T1B family. (276 aa)
	VDBG_04790	Proteasome subunit beta. (286 aa)
	VDBG_04830	Uncharacterized protein. (570 aa)
	VDBG_04905	26S protease regulatory subunit 7; Belongs to the AAA ATPase family. (439 aa)
	VDBG_05025	Proteasome endopeptidase complex. (313 aa)
	VDBG_04387	Proteasome subunit alpha type. (243 aa)
	VDBG_05129	26S proteasome non-ATPase regulatory subunit 4. (268 aa)
	VDBG_05144	Proteasome component C5. (264 aa)
	VDBG_05293	Proteasome endopeptidase complex. (263 aa)
	VDBG_05387	26S proteasome non-ATPase regulatory subunit 11. (402 aa)
	VDBG_05843	26S proteasome non-ATPase regulatory subunit 9. (225 aa)
	VDBG_05971	Proteasome component PUP3. (191 aa)
	VDBG_07100	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (857 aa)
	VDBG_07294	26S proteasome regulatory subunit rpn11. (336 aa)
	VDBG_07437	26S proteasome regulatory subunit RPN9. (382 aa)
	VDBG_07459	26S proteasome regulatory subunit rpn12. (286 aa)
	VDBG_07838	Uncharacterized protein. (1956 aa)
	VDBG_07966	Uncharacterized protein. (270 aa)
	VDBG_08295	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (884 aa)
	VDBG_08365	Proteasome maturation factor UMP1. (161 aa)
	VDBG_09515	26S protease regulatory subunit 4; Belongs to the AAA ATPase family. (439 aa)
	VDBG_10007	Proteasome subunit alpha type. (251 aa)

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00101	VDBG_00502	C9S8N3	C9S656	Proteasome subunit alpha type.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.999
VDBG_00101	VDBG_01411	C9S8N3	C9S812	Proteasome subunit alpha type.	26S protease regulatory subunit 6A-B.	0.998
VDBG_00101	VDBG_01441	C9S8N3	C9S882	Proteasome subunit alpha type.	Predicted protein.	0.878
VDBG_00101	VDBG_02265	C9S8N3	C9S9U3	Proteasome subunit alpha type.	26S proteasome regulatory subunit RPN5.	0.999
VDBG_00101	VDBG_02450	C9S8N3	C9SAQ2	Proteasome subunit alpha type.	Proteasome component PRE3.	0.999
VDBG_00101	VDBG_02830	C9S8N3	C9SCA6	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999
VDBG_00101	VDBG_03610	C9S8N3	C9SGG1	Proteasome subunit alpha type.	26S proteasome non-ATPase regulatory subunit 3.	0.637
VDBG_00101	VDBG_03629	C9S8N3	C9SGK3	Proteasome subunit alpha type.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.995
VDBG_00101	VDBG_03999	C9S8N3	C9SFA4	Proteasome subunit alpha type.	26S proteasome regulatory subunit rpn-8.	0.998
VDBG_00101	VDBG_04152	C9S8N3	C9SFU8	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
VDBG_00101	VDBG_04387	C9S8N3	C9SJB6	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
VDBG_00101	VDBG_04729	C9S8N3	C9SI47	Proteasome subunit alpha type.	26S protease regulatory subunit S10B; Belongs to the AAA ATPase family.	0.999
VDBG_00101	VDBG_04731	C9S8N3	C9SI49	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
VDBG_00101	VDBG_04790	C9S8N3	C9SIA8	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
VDBG_00101	VDBG_04830	C9S8N3	C9SIE8	Proteasome subunit alpha type.	Uncharacterized protein.	0.986
VDBG_00101	VDBG_04905	C9S8N3	C9SIM3	Proteasome subunit alpha type.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.999
VDBG_00101	VDBG_05025	C9S8N3	C9SIZ3	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999
VDBG_00101	VDBG_05129	C9S8N3	C9SK02	Proteasome subunit alpha type.	26S proteasome non-ATPase regulatory subunit 4.	0.999
VDBG_00101	VDBG_05144	C9S8N3	C9SK17	Proteasome subunit alpha type.	Proteasome component C5.	0.999
VDBG_00101	VDBG_05293	C9S8N3	C9SKG6	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999