STRINGSTRING
VDBG_00491 VDBG_00491 VDBG_00655 VDBG_00655 VDBG_00792 VDBG_00792 VDBG_01049 VDBG_01049 VDBG_02162 VDBG_02162 VDBG_01564 VDBG_01564 VDBG_01883 VDBG_01883 VDBG_03028 VDBG_03028 VDBG_03332 VDBG_03332 VDBG_03370 VDBG_03370 VDBG_03393 VDBG_03393 VDBG_02745 VDBG_02745 VDBG_02781 VDBG_02781 VDBG_04057 VDBG_04057 VDBG_03471 VDBG_03471 VDBG_03545 VDBG_03545 VDBG_03549 VDBG_03549 VDBG_03682 VDBG_03682 VDBG_03755 VDBG_03755 VDBG_03839 VDBG_03839 VDBG_04628 VDBG_04628 VDBG_04697 VDBG_04697 VDBG_04329 VDBG_04329 VDBG_04417 VDBG_04417 VDBG_05801 VDBG_05801 VDBG_05347 VDBG_05347 VDBG_05380 VDBG_05380 VDBG_05516 VDBG_05516 VDBG_05604 VDBG_05604 VDBG_05717 VDBG_05717 VDBG_05952 VDBG_05952 VDBG_06030 VDBG_06030 VDBG_06355 VDBG_06355 VDBG_06733 VDBG_06733 VDBG_06897 VDBG_06897 VDBG_07209 VDBG_07209 VDBG_07953 VDBG_07953 VDBG_08069 VDBG_08069 VDBG_08115 VDBG_08115 VDBG_08135 VDBG_08135 VDBG_08195 VDBG_08195 VDBG_08208 VDBG_08208 VDBG_08481 VDBG_08481 VDBG_08545 VDBG_08545 VDBG_08907 VDBG_08907 VDBG_08913 VDBG_08913 VDBG_08961 VDBG_08961 VDBG_09080 VDBG_09080 VDBG_09604 VDBG_09604 VDBG_09625 VDBG_09625
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDBG_00491Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (468 aa)
VDBG_00655Pex19 family protein. (359 aa)
VDBG_00792Long-chain-fatty-acid-CoA ligase. (615 aa)
VDBG_01049Peroxisomal targeting signal 2 receptor. (345 aa)
VDBG_02162Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (154 aa)
VDBG_01564Hydroxymethylglutaryl-CoA lyase. (372 aa)
VDBG_01883Peroxisomal membrane protein PEX16. (388 aa)
VDBG_03028Long-chain-fatty-acid-CoA ligase. (705 aa)
VDBG_03332D-amino-acid oxidase. (311 aa)
VDBG_03370Mevalonate kinase; Catalyzes the phosphorylation of mevalonate to mevalonate 5- phosphate, a key step in isoprenoid and cholesterol biosynthesis. Belongs to the GHMP kinase family. Mevalonate kinase subfamily. (445 aa)
VDBG_03393Alanine-glyoxylate aminotransferase. (388 aa)
VDBG_02745Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family. (740 aa)
VDBG_02781Uncharacterized protein. (317 aa)
VDBG_04057Alpha-methylacyl-CoA racemase. (378 aa)
VDBG_03471D-amino-acid oxidase. (374 aa)
VDBG_03545Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (184 aa)
VDBG_03549Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (250 aa)
VDBG_03682Peroxisomal biogenesis factor 2. (214 aa)
VDBG_03755Peroxisomal membrane protein PAS20. (430 aa)
VDBG_03839Peroxisomal long-chain fatty acid import protein. (845 aa)
VDBG_04628Superoxide dismutase. (304 aa)
VDBG_04697Peroxisome biosynthesis protein PAS1. (990 aa)
VDBG_04329Carnitine O-acetyltransferase; Belongs to the carnitine/choline acetyltransferase family. (401 aa)
VDBG_04417Peroxisome assembly protein. (442 aa)
VDBG_05801Xanthine dehydrogenase. (1367 aa)
VDBG_05347Epoxide hydrolase. (352 aa)
VDBG_05380Peroxisomal membrane protein PMP47A; Belongs to the mitochondrial carrier (TC 2.A.29) family. (320 aa)
VDBG_05516Carnitine O-palmitoyltransferase I. (841 aa)
VDBG_05604Non-specific lipid-transfer protein. (273 aa)
VDBG_05717ATP-binding cassette sub-family D member 1. (625 aa)
VDBG_05952Peroxisomal biogenesis factor 6; Belongs to the AAA ATPase family. (413 aa)
VDBG_06030Peroxisomal 2,4-dienoyl-CoA reductase SPS19. (317 aa)
VDBG_06355Oxygen oxidoreductase. (362 aa)
VDBG_06733NUDIX-like domain-containing protein. (234 aa)
VDBG_06897Uncharacterized protein. (275 aa)
VDBG_07209SYM1; Belongs to the peroxisomal membrane protein PXMP2/4 family. (172 aa)
VDBG_07953Long-chain-fatty-acid-CoA ligase. (692 aa)
VDBG_08069Sarcosine oxidase. (375 aa)
VDBG_08115Uncharacterized protein. (375 aa)
VDBG_081353-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (416 aa)
VDBG_08195Peroxisomal membrane protein PER10. (293 aa)
VDBG_08208Peroxin-11. (167 aa)
VDBG_084813-ketoacyl-CoA thiolase. (262 aa)
VDBG_08545Sarcosine oxidase. (441 aa)
VDBG_08907Epoxide hydrolase. (343 aa)
VDBG_08913Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family. (719 aa)
VDBG_08961Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (230 aa)
VDBG_09080Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (205 aa)
VDBG_09604Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. (519 aa)
VDBG_096253-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (352 aa)
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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