STRINGSTRING
Gobs_0120 Gobs_0120 Gobs_0121 Gobs_0121 Gobs_0122 Gobs_0122 Gobs_0385 Gobs_0385 Gobs_0838 Gobs_0838 Gobs_0839 Gobs_0839 Gobs_0840 Gobs_0840 Gobs_1037 Gobs_1037 Gobs_1038 Gobs_1038 Gobs_2493 Gobs_2493 Gobs_2494 Gobs_2494 Gobs_3275 Gobs_3275 Gobs_3278 Gobs_3278 Gobs_3279 Gobs_3279 Gobs_3280 Gobs_3280 Gobs_3352 Gobs_3352 Gobs_3353 Gobs_3353 Gobs_3354 Gobs_3354 Gobs_3355 Gobs_3355 Gobs_3356 Gobs_3356 Gobs_3552 Gobs_3552 Gobs_3553 Gobs_3553 Gobs_3554 Gobs_3554 Gobs_3555 Gobs_3555 Gobs_3681 Gobs_3681 Gobs_4253 Gobs_4253 Gobs_4256 Gobs_4256 Gobs_4257 Gobs_4257
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Gobs_0120PFAM: DnaJ homologue, subfamily C, member 28, conserved domain; KEGG: kra:Krad_0960 hypothetical protein. (162 aa)
Gobs_0121Hypothetical protein. (64 aa)
Gobs_0122Hypothetical protein. (56 aa)
Gobs_0385Beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase family 3 domain protein; KEGG: bcv:Bcav_3777 beta-N-acetylhexosaminidase. (390 aa)
Gobs_0838KEGG: sen:SACE_0039 hypothetical protein. (52 aa)
Gobs_0839TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: sen:SACE_0038 putative sortase-like protein. (234 aa)
Gobs_0840PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: cms:CMS_0950 hypothetical protein. (311 aa)
Gobs_1037KEGG: rha:RHA1_ro00231 hypothetical protein. (73 aa)
Gobs_1038PFAM: ribonuclease BN; KEGG: sen:SACE_1794 ribonuclease BN. (355 aa)
Gobs_2493PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S15; KEGG: sen:SACE_0253 peptidase S9, prolyl oligopeptidase active site region. (607 aa)
Gobs_2494TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: smd:Smed_4755 putative ribonuclease BN. (332 aa)
Gobs_3275Hypothetical protein. (116 aa)
Gobs_3278KEGG: mxa:MXAN_5661 putative BatC protein. (88 aa)
Gobs_3279PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: saq:Sare_2302 cupin 4 family protein. (436 aa)
Gobs_3280PFAM: Sucraseferredoxin family protein; KEGG: mgi:Mflv_0338 sucraseferredoxin family protein. (313 aa)
Gobs_3352KEGG: sgr:SGR_5337 hypothetical protein. (70 aa)
Gobs_3353PFAM: protein of unknown function DUF1469; KEGG: kra:Krad_4481 hypothetical protein. (145 aa)
Gobs_3354KEGG: nca:Noca_0933 hypothetical protein. (149 aa)
Gobs_3355KEGG: nfa:nfa23230 hypothetical protein. (92 aa)
Gobs_3356TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: kra:Krad_1517 putative ribonuclease BN. (374 aa)
Gobs_3552Hypothetical protein. (53 aa)
Gobs_3553KEGG: sen:SACE_1798 hypothetical protein. (74 aa)
Gobs_3554PFAM: VanW family protein; KEGG: rha:RHA1_ro05201 hypothetical protein. (748 aa)
Gobs_3555PFAM: ribonuclease BN; KEGG: rop:ROP_68020 hypothetical membrane protein. (354 aa)
Gobs_3681PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rha:RHA1_ro06693 5-valerolactone hydrolase. (299 aa)
Gobs_4253KEGG: sma:SAV_3097 hypothetical protein. (216 aa)
Gobs_4256PFAM: alpha/beta hydrolase fold; KEGG: fal:FRAAL5710 putative hydrolase. (310 aa)
Gobs_4257PFAM: Protein of unknown function DUF2236; KEGG: sma:SAV_1266 hypothetical protein. (290 aa)
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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