STRINGSTRING
Gobs_0053 Gobs_0053 Gobs_0054 Gobs_0054 Gobs_0055 Gobs_0055 Gobs_0056 Gobs_0056 Gobs_0057 Gobs_0057 Gobs_0334 Gobs_0334 Gobs_0663 Gobs_0663 Gobs_0664 Gobs_0664 Gobs_0665 Gobs_0665 Gobs_0862 Gobs_0862 Gobs_0863 Gobs_0863 Gobs_0865 Gobs_0865 cobB-2 cobB-2 Gobs_1004 Gobs_1004 Gobs_1370 Gobs_1370 Gobs_3008 Gobs_3008 Gobs_4219 Gobs_4219 Gobs_5032 Gobs_5032
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Gobs_0053PFAM: regulatory protein TetR; KEGG: sco:SCO7809 TetR family transcriptional regulator. (188 aa)
Gobs_0054Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: aau:AAur_2055 GntR family transcriptional regulator. (242 aa)
Gobs_0055Hypothetical protein. (161 aa)
Gobs_0056KEGG: nca:Noca_1471 integral membrane protein. (90 aa)
Gobs_0057KEGG: nca:Noca_1872 hypothetical protein. (89 aa)
Gobs_0334PFAM: regulatory protein TetR; KEGG: mrd:Mrad2831_4515 TetR family transcriptional regulator. (226 aa)
Gobs_0663KEGG: fre:Franean1_2844 hypothetical protein. (231 aa)
Gobs_0664PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bcv:Bcav_1651 lysine exporter protein (LysE/YggA). (210 aa)
Gobs_0665TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; KEGG: kra:Krad_4012 LysR family transcriptional regulator. (299 aa)
Gobs_0862PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV_7067 hydrolase. (298 aa)
Gobs_0863PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: rer:RER_53030 cytosine permease. (440 aa)
Gobs_0865PFAM: Polyketide cyclase/dehydrase; KEGG: sco:SCO6482 hypothetical protein. (151 aa)
cobB-2Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily. (297 aa)
Gobs_1004KEGG: stp:Strop_0876 hypothetical protein. (197 aa)
Gobs_1370Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: sen:SACE_1255 TetR transcription regulator. (199 aa)
Gobs_3008PFAM: regulatory protein TetR; KEGG: nfa:nfa33040 putative transcriptional regulator. (280 aa)
Gobs_4219PFAM: regulatory protein TetR; KEGG: fal:FRAAL1219 TetR family transcriptional regulator. (202 aa)
Gobs_5032KEGG: kra:Krad_3420 hypothetical protein. (250 aa)
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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