STRINGSTRING
Gobs_1341 Gobs_1341 Gobs_1342 Gobs_1342 Gobs_1346 Gobs_1346 Gobs_1347 Gobs_1347 Gobs_1348 Gobs_1348
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Gobs_1341PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO2254 transmembrane efflux protein. (400 aa)
Gobs_1342PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: sgr:SGR_6670 putative dehydrogenase. (393 aa)
Gobs_1346TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: nfa:nfa21890 putative phosphoesterase. (167 aa)
Gobs_1347PFAM: major facilitator superfamily MFS_1; KEGG: msm:MSMEG_2380 sugar transporter family protein. (410 aa)
Gobs_1348PFAM: Methyltransferase type 11; KEGG: ank:AnaeK_1716 methyltransferase type 11. (287 aa)
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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