STRINGSTRING
Gobs_0594 Gobs_0594 Gobs_0672 Gobs_0672 Gobs_0673 Gobs_0673 Gobs_1210 Gobs_1210 Gobs_1211 Gobs_1211 Gobs_3420 Gobs_3420 Gobs_3421 Gobs_3421
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Gobs_0594PFAM: Type II secretion system F domain; KEGG: tfu:Tfu_0126 putative integral membrane protein. (237 aa)
Gobs_0672PFAM: Type II secretion system F domain; KEGG: saq:Sare_4969 type II secretion system protein. (300 aa)
Gobs_0673PFAM: Type II secretion system F domain; KEGG: stp:Strop_4455 type II secretion system protein. (303 aa)
Gobs_1210PFAM: Type II secretion system F domain; KEGG: fre:Franean1_5825 type II secretion system protein. (285 aa)
Gobs_1211PFAM: Type II secretion system F domain; KEGG: fal:FRAAL1321 hypothetical protein. (313 aa)
Gobs_3420PFAM: Type II secretion system F domain; KEGG: ach:Achl_4446 type II secretion system protein. (295 aa)
Gobs_3421PFAM: Type II secretion system F domain; KEGG: ach:Achl_4445 type II secretion system protein. (310 aa)
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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