STRINGSTRING
Gobs_4915 Gobs_4915 Gobs_0058 Gobs_0058 Gobs_0215 Gobs_0215 Gobs_0341 Gobs_0341 Gobs_1022 Gobs_1022 Gobs_1359 Gobs_1359 Gobs_1524 Gobs_1524 Gobs_1920 Gobs_1920 Gobs_2036 Gobs_2036 rnz rnz pqqB pqqB Gobs_2782 Gobs_2782 Gobs_2886 Gobs_2886 Gobs_2888 Gobs_2888 Gobs_2903 Gobs_2903 Gobs_3167 Gobs_3167 rnj rnj Gobs_4749 Gobs_4749 Gobs_4760 Gobs_4760
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Gobs_4915Putative Zn-dependent hydrolase of beta- lactamase fold family; KEGG: mgi:Mflv_2585 protein Pfam: Lactamase_B. (272 aa)
Gobs_0058KEGG: sco:SCO7708 hypothetical protein. (212 aa)
Gobs_0215PFAM: beta-lactamase domain protein; KEGG: rop:ROP_50980 hypothetical protein. (409 aa)
Gobs_0341Zn-dependent hydrolase of the beta-lactamase fold-like protein; KEGG: sgr:SGR_1142 hypothetical protein. (291 aa)
Gobs_1022KEGG: kra:Krad_3429 hypothetical protein. (290 aa)
Gobs_1359PFAM: beta-lactamase domain protein; KEGG: sco:SCO2908 hypothetical protein. (246 aa)
Gobs_1524KEGG: mxa:MXAN_1784 hypothetical protein. (249 aa)
Gobs_1920PFAM: beta-lactamase domain protein; KEGG: rop:ROP_33350 hypothetical protein. (320 aa)
Gobs_2036PFAM: beta-lactamase domain protein; KEGG: ace:Acel_1108 beta-lactamase domain- containing protein. (221 aa)
rnzBeta-lactamase domain protein; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (306 aa)
pqqBPyrroloquinoline quinone biosynthesis protein PqqB; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. (300 aa)
Gobs_2782KEGG: saq:Sare_0065 Zn-dependent hydrolase of the beta-lactamase fold-like protein. (256 aa)
Gobs_2886PFAM: beta-lactamase domain protein; KEGG: rer:RER_54690 hypothetical protein. (220 aa)
Gobs_2888PFAM: beta-lactamase domain protein; KEGG: rer:RER_57720 hypothetical protein. (296 aa)
Gobs_2903PFAM: beta-lactamase domain protein; KEGG: sgr:SGR_5825 putative hydrolase. (202 aa)
Gobs_3167PFAM: beta-lactamase domain protein; KEGG: stp:Strop_1818 beta-lactamase domain- containing protein. (231 aa)
rnjBeta-lactamase domain protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (566 aa)
Gobs_4749PFAM: beta-lactamase domain protein; KEGG: sgr:SGR_3334 putative hydrolase. (288 aa)
Gobs_4760PFAM: beta-lactamase domain protein; KEGG: sgr:SGR_5825 putative hydrolase. (202 aa)
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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