5 items (Austrofundulus limnaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106510938	Growth arrest and DNA damage-inducible protein GADD45 beta-like. (154 aa)
	map3k4	Mitogen-activated protein kinase kinase kinase 4 isoform X1. (1579 aa)
	LOC106528824	Growth arrest and DNA damage-inducible protein GADD45 alpha-like. (156 aa)
	LOC106530368	Growth arrest and DNA damage-inducible protein GADD45 gamma-like. (154 aa)
	gadd45b	Growth arrest and DNA damage-inducible protein GADD45 beta. (163 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106510938	map3k4	A0A2I4AI29	A0A2I4BAH5	Growth arrest and DNA damage-inducible protein GADD45 beta-like.	Mitogen-activated protein kinase kinase kinase 4 isoform X1.	0.943
LOC106528824	map3k4	A0A2I4CHR0	A0A2I4BAH5	Growth arrest and DNA damage-inducible protein GADD45 alpha-like.	Mitogen-activated protein kinase kinase kinase 4 isoform X1.	0.943
LOC106530368	map3k4	A0A2I4CN56	A0A2I4BAH5	Growth arrest and DNA damage-inducible protein GADD45 gamma-like.	Mitogen-activated protein kinase kinase kinase 4 isoform X1.	0.959
gadd45b	map3k4	A0A2I4CQW2	A0A2I4BAH5	Growth arrest and DNA damage-inducible protein GADD45 beta.	Mitogen-activated protein kinase kinase kinase 4 isoform X1.	0.979
map3k4	LOC106510938	A0A2I4BAH5	A0A2I4AI29	Mitogen-activated protein kinase kinase kinase 4 isoform X1.	Growth arrest and DNA damage-inducible protein GADD45 beta-like.	0.943
map3k4	LOC106528824	A0A2I4BAH5	A0A2I4CHR0	Mitogen-activated protein kinase kinase kinase 4 isoform X1.	Growth arrest and DNA damage-inducible protein GADD45 alpha-like.	0.943
map3k4	LOC106530368	A0A2I4BAH5	A0A2I4CN56	Mitogen-activated protein kinase kinase kinase 4 isoform X1.	Growth arrest and DNA damage-inducible protein GADD45 gamma-like.	0.959
map3k4	gadd45b	A0A2I4BAH5	A0A2I4CQW2	Mitogen-activated protein kinase kinase kinase 4 isoform X1.	Growth arrest and DNA damage-inducible protein GADD45 beta.	0.979