(34 nodes) SNAP receptor activity, and NSF attachment protein network (Austrofundulus limnaeus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	LOC106512467	Vesicle-associated membrane protein 4-like. (141 aa)
	LOC106512827	Syntaxin-6-like. (100 aa)
	stx16	Syntaxin-16 isoform X1; Belongs to the syntaxin family. (322 aa)
	sec22c	Vesicle-trafficking protein SEC22c; Belongs to the synaptobrevin family. (303 aa)
	sec22b	Vesicle-trafficking protein SEC22b isoform X1; Belongs to the synaptobrevin family. (219 aa)
	stx17	Syntaxin-17; Belongs to the syntaxin family. (288 aa)
	stx12	Syntaxin-12; Belongs to the syntaxin family. (267 aa)
	stx8	Syntaxin-8. (238 aa)
	LOC106515491	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (248 aa)
	stx5	Syntaxin-5 isoform X1; Belongs to the syntaxin family. (327 aa)
	vti1a	Vesicle transport through interaction with t-SNAREs homolog 1A isoform X1. (224 aa)
	LOC106518545	Beta-soluble NSF attachment protein-like. (296 aa)
	ykt6	Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family. (198 aa)
	snap29	Synaptosomal-associated protein 29. (259 aa)
	LOC106521948	Vesicle-fusing ATPase-like. (744 aa)
	LOC106522035	Vesicle-associated membrane protein 8-like isoform X1. (117 aa)
	nsf	Vesicle-fusing ATPase. (745 aa)
	LOC106525666	Gamma-soluble NSF attachment protein-like. (322 aa)
	napg	Gamma-soluble NSF attachment protein. (206 aa)
	bet1	BET1 homolog. (112 aa)
	LOC106526510	Syntaxin-6-like; Belongs to the syntaxin family. (243 aa)
	bet1l	BET1-like protein. (109 aa)
	scfd1	Sec1 family domain-containing protein 1; Belongs to the STXBP/unc-18/SEC1 family. (633 aa)
	gosr2	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (212 aa)
	LOC106529247	Beta-soluble NSF attachment protein. (295 aa)
	LOC106529847	Alpha-soluble NSF attachment protein isoform X1. (295 aa)
	sec22a	Vesicle-trafficking protein SEC22a; Belongs to the synaptobrevin family. (176 aa)
	LOC106531801	Syntaxin-7-like; Belongs to the syntaxin family. (256 aa)
	vamp8	Vesicle-associated membrane protein 8. (122 aa)
	LOC106532968	Vesicle-associated membrane protein 8-like isoform X1. (105 aa)
	vti1b	Vesicle transport through interaction with t-SNAREs homolog 1B. (227 aa)
	vamp4	Vesicle-associated membrane protein 4. (404 aa)
	uso1	General vesicular transport factor p115 isoform X1. (964 aa)
	LOC106536026	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (243 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106512467	LOC106512827	A0A2I4AM29	A0A2I4AMU0	Vesicle-associated membrane protein 4-like.	Syntaxin-6-like.	0.850
LOC106512467	LOC106515491	A0A2I4AM29	A0A2I4AZ49	Vesicle-associated membrane protein 4-like.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.591
LOC106512467	LOC106518545	A0A2I4AM29	A0A2I4BC60	Vesicle-associated membrane protein 4-like.	Beta-soluble NSF attachment protein-like.	0.725
LOC106512467	LOC106521948	A0A2I4AM29	A0A2I4BR06	Vesicle-associated membrane protein 4-like.	Vesicle-fusing ATPase-like.	0.694
LOC106512467	LOC106522035	A0A2I4AM29	A0A2I4BRF1	Vesicle-associated membrane protein 4-like.	Vesicle-associated membrane protein 8-like isoform X1.	0.481
LOC106512467	LOC106525666	A0A2I4AM29	A0A2I4C615	Vesicle-associated membrane protein 4-like.	Gamma-soluble NSF attachment protein-like.	0.711
LOC106512467	LOC106526510	A0A2I4AM29	A0A2I4C9D4	Vesicle-associated membrane protein 4-like.	Syntaxin-6-like; Belongs to the syntaxin family.	0.984
LOC106512467	LOC106529247	A0A2I4AM29	A0A2I4CJA3	Vesicle-associated membrane protein 4-like.	Beta-soluble NSF attachment protein.	0.725
LOC106512467	LOC106529847	A0A2I4AM29	A0A2I4CLE5	Vesicle-associated membrane protein 4-like.	Alpha-soluble NSF attachment protein isoform X1.	0.725
LOC106512467	LOC106531801	A0A2I4AM29	A0A2I4CT70	Vesicle-associated membrane protein 4-like.	Syntaxin-7-like; Belongs to the syntaxin family.	0.718
LOC106512467	LOC106536026	A0A2I4AM29	A0A2I4D8S7	Vesicle-associated membrane protein 4-like.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.591
LOC106512467	bet1	A0A2I4AM29	A0A2I4C776	Vesicle-associated membrane protein 4-like.	BET1 homolog.	0.681
LOC106512467	bet1l	A0A2I4AM29	A0A2I4C9W3	Vesicle-associated membrane protein 4-like.	BET1-like protein.	0.513
LOC106512467	gosr2	A0A2I4AM29	A0A2I4CG43	Vesicle-associated membrane protein 4-like.	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.566
LOC106512467	napg	A0A2I4AM29	A0A2I4C6H7	Vesicle-associated membrane protein 4-like.	Gamma-soluble NSF attachment protein.	0.711
LOC106512467	nsf	A0A2I4AM29	A0A2I4C4D4	Vesicle-associated membrane protein 4-like.	Vesicle-fusing ATPase.	0.694
LOC106512467	scfd1	A0A2I4AM29	A0A2I4CC70	Vesicle-associated membrane protein 4-like.	Sec1 family domain-containing protein 1; Belongs to the STXBP/unc-18/SEC1 family.	0.608
LOC106512467	snap29	A0A2I4AM29	A0A2I4BHM9	Vesicle-associated membrane protein 4-like.	Synaptosomal-associated protein 29.	0.660
LOC106512467	stx12	A0A2I4AM29	A0A2I4AXV7	Vesicle-associated membrane protein 4-like.	Syntaxin-12; Belongs to the syntaxin family.	0.718
LOC106512467	stx16	A0A2I4AM29	A0A2I4APP6	Vesicle-associated membrane protein 4-like.	Syntaxin-16 isoform X1; Belongs to the syntaxin family.	0.991