(29 nodes) Transcription elongation factor complex, and Tricellular tight junction network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106511108	Transcription elongation factor B polypeptide 3-like. (563 aa)
	LOC106514330	RNA polymerase II elongation factor ELL-like. (601 aa)
	ice2	Little elongation complex subunit 2 isoform X1. (698 aa)
	ell	RNA polymerase II elongation factor ELL. (621 aa)
	cdk13	Cyclin-dependent kinase 13. (1417 aa)
	LOC106516227	AF4/FMR2 family member 1-like isoform X1. (1119 aa)
	mllt1	Protein ENL. (544 aa)
	hdgf	Hepatoma-derived growth factor. (217 aa)
	LOC106518472	RNA polymerase II elongation factor ELL-like. (622 aa)
	LOC106518975	RNA polymerase II elongation factor ELL2-like isoform X1. (605 aa)
	LOC106519130	cyclin-T2-like; Belongs to the cyclin family. (587 aa)
	dixdc1	Dixin isoform X1. (466 aa)
	LOC106521558	Hepatoma-derived growth factor-related protein 2 isoform X1. (661 aa)
	aff4	AF4/FMR2 family member 4. (1143 aa)
	ell2	RNA polymerase II elongation factor ELL2. (660 aa)
	ccnk	cyclin-K; Belongs to the cyclin family. (541 aa)
	LOC106526453	Protein transport protein SEC31-like. (333 aa)
	eaf1	ELL-associated factor 1. (259 aa)
	LOC106527039	Cyclin-dependent kinase 9-like. (239 aa)
	ccnt1	cyclin-T1 isoform X1; Belongs to the cyclin family. (697 aa)
	cdk12	Cyclin-dependent kinase 12. (1339 aa)
	ccnt2	cyclin-T2 isoform X1; Belongs to the cyclin family. (714 aa)
	LOC106530141	ELL-associated factor 2-like. (250 aa)
	cdk9	LOW QUALITY PROTEIN: cyclin-dependent kinase 9; Belongs to the protein kinase superfamily. (393 aa)
	LOC106531757	MARVEL domain-containing protein 2-like. (573 aa)
	LOC106532580	MARVEL domain-containing protein 2-like. (559 aa)
	LOC106534092	Trichohyalin-like. (1520 aa)
	LOC106534813	MARVEL domain-containing protein 2-like. (168 aa)
	LOC106536726	Little elongation complex subunit 2-like. (938 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106511108	LOC106514330	A0A2I4AIK5	A0A2I4AU24	Transcription elongation factor B polypeptide 3-like.	RNA polymerase II elongation factor ELL-like.	0.624
LOC106511108	LOC106518472	A0A2I4AIK5	A0A2I4BBZ8	Transcription elongation factor B polypeptide 3-like.	RNA polymerase II elongation factor ELL-like.	0.624
LOC106511108	LOC106518975	A0A2I4AIK5	A0A2I4BDR6	Transcription elongation factor B polypeptide 3-like.	RNA polymerase II elongation factor ELL2-like isoform X1.	0.624
LOC106511108	LOC106519130	A0A2I4AIK5	A0A2I4BEF9	Transcription elongation factor B polypeptide 3-like.	cyclin-T2-like; Belongs to the cyclin family.	0.433
LOC106511108	LOC106527039	A0A2I4AIK5	A0A2I4CB86	Transcription elongation factor B polypeptide 3-like.	Cyclin-dependent kinase 9-like.	0.502
LOC106511108	LOC106530141	A0A2I4AIK5	A0A2I4CME5	Transcription elongation factor B polypeptide 3-like.	ELL-associated factor 2-like.	0.665
LOC106511108	ccnk	A0A2I4AIK5	A0A2I4C5A4	Transcription elongation factor B polypeptide 3-like.	cyclin-K; Belongs to the cyclin family.	0.585
LOC106511108	ccnt1	A0A2I4AIK5	A0A2I4CDB9	Transcription elongation factor B polypeptide 3-like.	cyclin-T1 isoform X1; Belongs to the cyclin family.	0.433
LOC106511108	ccnt2	A0A2I4AIK5	A0A2I4CJZ3	Transcription elongation factor B polypeptide 3-like.	cyclin-T2 isoform X1; Belongs to the cyclin family.	0.433
LOC106511108	cdk12	A0A2I4AIK5	A0A2I4CEB4	Transcription elongation factor B polypeptide 3-like.	Cyclin-dependent kinase 12.	0.473
LOC106511108	cdk13	A0A2I4AIK5	A0A2I4AZG6	Transcription elongation factor B polypeptide 3-like.	Cyclin-dependent kinase 13.	0.473
LOC106511108	cdk9	A0A2I4AIK5	A0A2I4CST4	Transcription elongation factor B polypeptide 3-like.	LOW QUALITY PROTEIN: cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	0.502
LOC106511108	eaf1	A0A2I4AIK5	A0A2I4CAP1	Transcription elongation factor B polypeptide 3-like.	ELL-associated factor 1.	0.665
LOC106511108	ell	A0A2I4AIK5	A0A2I4AX85	Transcription elongation factor B polypeptide 3-like.	RNA polymerase II elongation factor ELL.	0.624
LOC106511108	ell2	A0A2I4AIK5	A0A2I4BXP7	Transcription elongation factor B polypeptide 3-like.	RNA polymerase II elongation factor ELL2.	0.624
LOC106514330	LOC106511108	A0A2I4AU24	A0A2I4AIK5	RNA polymerase II elongation factor ELL-like.	Transcription elongation factor B polypeptide 3-like.	0.624
LOC106514330	LOC106516227	A0A2I4AU24	A0A2I4B2H6	RNA polymerase II elongation factor ELL-like.	AF4/FMR2 family member 1-like isoform X1.	0.765
LOC106514330	LOC106519130	A0A2I4AU24	A0A2I4BEF9	RNA polymerase II elongation factor ELL-like.	cyclin-T2-like; Belongs to the cyclin family.	0.612
LOC106514330	LOC106526453	A0A2I4AU24	A0A2I4C969	RNA polymerase II elongation factor ELL-like.	Protein transport protein SEC31-like.	0.658
LOC106514330	LOC106527039	A0A2I4AU24	A0A2I4CB86	RNA polymerase II elongation factor ELL-like.	Cyclin-dependent kinase 9-like.	0.684