(38 nodes) Mixed, incl. Sodium/potassium/calcium exchanger, and MITF/TFEB/TFEC/TFE3 N-terminus network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106510758	Melanocyte protein PMEL-like. (736 aa)
	tfeb	Transcription factor EB isoform X1. (533 aa)
	slc45a1	Proton-associated sugar transporter A isoform X1. (815 aa)
	tyrp1	5,6-dihydroxyindole-2-carboxylic acid oxidase. (518 aa)
	LOC106515332	Solute carrier family 2, facilitated glucose transporter member 9-like; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (522 aa)
	LOC106516039	Sodium/potassium/calcium exchanger 3-like; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (584 aa)
	LOC106516336	Sodium/potassium/calcium exchanger 3-like; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (611 aa)
	mdfic	myoD family inhibitor domain-containing protein. (183 aa)
	LOC106517421	Testicular acid phosphatase homolog; Belongs to the histidine acid phosphatase family. (413 aa)
	LOC106517794	Forkhead box protein D1-like. (302 aa)
	slc45a4	Solute carrier family 45 member 4 isoform X1. (886 aa)
	LOC106518251	FERM domain-containing protein 4B-like isoform X1. (1053 aa)
	LOC106518255	Microphthalmia-associated transcription factor-like isoform X1. (406 aa)
	LOC106518258	Forkhead box protein P1-B isoform X1. (671 aa)
	mitf	Microphthalmia-associated transcription factor isoform X1. (505 aa)
	foxp1	Forkhead box protein P1 isoform X1. (609 aa)
	frmd4b	FERM domain-containing protein 4B isoform X1. (1002 aa)
	LOC106519294	2-epi-5-epi-valiolone synthase-like. (455 aa)
	st6galnac3	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3; Belongs to the glycosyltransferase 29 family. (306 aa)
	LOC106521717	Solute carrier family 2, facilitated glucose transporter member 11-like isoform X1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (511 aa)
	LOC106522594	C-Maf-inducing protein. (312 aa)
	mlana	Melanoma antigen recognized by T-cells 1. (120 aa)
	LOC106523521	myoD family inhibitor domain-containing protein-like. (280 aa)
	trafd1	TRAF-type zinc finger domain-containing protein 1 isoform X1. (576 aa)
	LOC106524398	Carbonic anhydrase-related protein 10 isoform X1; Belongs to the alpha-carbonic anhydrase family. (328 aa)
	slc24a3	Sodium/potassium/calcium exchanger 3; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (627 aa)
	LOC106525820	Sodium/potassium/calcium exchanger 3-like; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (644 aa)
	LOC106527088	Solute carrier family 45 member 4-like. (817 aa)
	LOC106527391	Sodium/potassium/calcium exchanger 4-like isoform X1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (609 aa)
	LOC106527423	Sodium/potassium/calcium exchanger 1-like; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (504 aa)
	dct	L-dopachrome tautomerase. (516 aa)
	tspan10	Tetraspanin. (320 aa)
	slc24a5	Sodium/potassium/calcium exchanger 5; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (536 aa)
	tfe3	Transcription factor E3. (451 aa)
	LOC106533188	Sodium/potassium/calcium exchanger 1-like; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (312 aa)
	LOC106533782	Transcription factor E3-like. (491 aa)
	best2	Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (606 aa)
	LOC106537269	Sodium/potassium/calcium exchanger 3-like; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (588 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106510758	LOC106518255	A0A2I4AHF9	A0A2I4BB22	Melanocyte protein PMEL-like.	Microphthalmia-associated transcription factor-like isoform X1.	0.497
LOC106510758	LOC106521717	A0A2I4AHF9	A0A2I4BQ60	Melanocyte protein PMEL-like.	Solute carrier family 2, facilitated glucose transporter member 11-like isoform X1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.553
LOC106510758	LOC106524398	A0A2I4AHF9	A0A2I4C0X7	Melanocyte protein PMEL-like.	Carbonic anhydrase-related protein 10 isoform X1; Belongs to the alpha-carbonic anhydrase family.	0.498
LOC106510758	dct	A0A2I4AHF9	A0A2I4CFG8	Melanocyte protein PMEL-like.	L-dopachrome tautomerase.	0.576
LOC106510758	mitf	A0A2I4AHF9	A0A2I4BF20	Melanocyte protein PMEL-like.	Microphthalmia-associated transcription factor isoform X1.	0.545
LOC106510758	mlana	A0A2I4AHF9	A0A2I4BUR3	Melanocyte protein PMEL-like.	Melanoma antigen recognized by T-cells 1.	0.854
LOC106510758	slc24a5	A0A2I4AHF9	A0A2I4CN48	Melanocyte protein PMEL-like.	Sodium/potassium/calcium exchanger 5; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.691
LOC106510758	slc45a1	A0A2I4AHF9	A0A2I4AS35	Melanocyte protein PMEL-like.	Proton-associated sugar transporter A isoform X1.	0.470
LOC106510758	tspan10	A0A2I4AHF9	A0A2I4CGR8	Melanocyte protein PMEL-like.	Tetraspanin.	0.571
LOC106510758	tyrp1	A0A2I4AHF9	A0A2I4AWA2	Melanocyte protein PMEL-like.	5,6-dihydroxyindole-2-carboxylic acid oxidase.	0.643
LOC106515332	slc24a3	A0A2I4AYC7	A0A2I4C172	Solute carrier family 2, facilitated glucose transporter member 9-like; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Sodium/potassium/calcium exchanger 3; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.656
LOC106515332	slc24a5	A0A2I4AYC7	A0A2I4CN48	Solute carrier family 2, facilitated glucose transporter member 9-like; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Sodium/potassium/calcium exchanger 5; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.510
LOC106518251	LOC106518258	A0A2I4BAW2	A0A2I4BB32	FERM domain-containing protein 4B-like isoform X1.	Forkhead box protein P1-B isoform X1.	0.561
LOC106518251	LOC106519294	A0A2I4BAW2	A0A2I4BF35	FERM domain-containing protein 4B-like isoform X1.	2-epi-5-epi-valiolone synthase-like.	0.560
LOC106518251	LOC106523521	A0A2I4BAW2	A0A2I4BXH5	FERM domain-containing protein 4B-like isoform X1.	myoD family inhibitor domain-containing protein-like.	0.599
LOC106518251	mitf	A0A2I4BAW2	A0A2I4BF20	FERM domain-containing protein 4B-like isoform X1.	Microphthalmia-associated transcription factor isoform X1.	0.583
LOC106518255	LOC106510758	A0A2I4BB22	A0A2I4AHF9	Microphthalmia-associated transcription factor-like isoform X1.	Melanocyte protein PMEL-like.	0.497
LOC106518255	LOC106519294	A0A2I4BB22	A0A2I4BF35	Microphthalmia-associated transcription factor-like isoform X1.	2-epi-5-epi-valiolone synthase-like.	0.496
LOC106518255	dct	A0A2I4BB22	A0A2I4CFG8	Microphthalmia-associated transcription factor-like isoform X1.	L-dopachrome tautomerase.	0.640
LOC106518255	frmd4b	A0A2I4BB22	A0A2I4BF30	Microphthalmia-associated transcription factor-like isoform X1.	FERM domain-containing protein 4B isoform X1.	0.410