(23 nodes) Mixed, incl. E3 ubiquitin ligase RBR family, and Locomotory exploration behavior network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106515410	Protein phosphatase 1B-like. (274 aa)
	herc4	Probable E3 ubiquitin-protein ligase HERC4. (1042 aa)
	LOC106518163	RBR-type E3 ubiquitin transferase. (840 aa)
	rnf217	RBR-type E3 ubiquitin transferase. (573 aa)
	LOC106520213	Probable E3 ubiquitin-protein ligase HERC3. (1017 aa)
	rnf216	E3 ubiquitin-protein ligase RNF216. (1065 aa)
	LOC106521463	Probable E3 ubiquitin-protein ligase HERC6 isoform X1. (1056 aa)
	rnf144a	RBR-type E3 ubiquitin transferase. (295 aa)
	sacs	Sacsin isoform X1. (4588 aa)
	LOC106522194	Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	rnf14	RBR-type E3 ubiquitin transferase. (481 aa)
	hectd2	Probable E3 ubiquitin-protein ligase HECTD2. (759 aa)
	LOC106525297	RBR-type E3 ubiquitin transferase. (631 aa)
	LOC106526454	Sacsin-like. (4271 aa)
	LOC106529126	RBR-type E3 ubiquitin transferase. (844 aa)
	LOC106531208	Ubiquitin-protein ligase E3A-like. (622 aa)
	LOC106532469	Ubiquitin-protein ligase E3A-like. (818 aa)
	ube2l3	Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	LOC106535796	RBR-type E3 ubiquitin transferase. (639 aa)
	LOC106535948	Protein phosphatase 1B-like. (158 aa)
	LOC106536101	Ubiquitin-protein ligase E3A. (563 aa)
	arih1	RBR-type E3 ubiquitin transferase. (528 aa)
	LOC106536923	RBR-type E3 ubiquitin transferase. (893 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106515410	LOC106535948	A0A2I4AYV8	A0A2I4D8J3	Protein phosphatase 1B-like.	Protein phosphatase 1B-like.	0.447
LOC106515410	arih1	A0A2I4AYV8	A0A2I4D9Q7	Protein phosphatase 1B-like.	RBR-type E3 ubiquitin transferase.	0.501
LOC106518163	LOC106522194	A0A2I4BAJ1	A0A2I4BS66	RBR-type E3 ubiquitin transferase.	Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.	0.554
LOC106518163	rnf216	A0A2I4BAJ1	A0A2I4BKQ5	RBR-type E3 ubiquitin transferase.	E3 ubiquitin-protein ligase RNF216.	0.504
LOC106518163	ube2l3	A0A2I4BAJ1	A0A2I4D1L4	RBR-type E3 ubiquitin transferase.	Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.	0.538
LOC106520213	LOC106522194	A0A2I4BIT4	A0A2I4BS66	Probable E3 ubiquitin-protein ligase HERC3.	Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.	0.580
LOC106520213	arih1	A0A2I4BIT4	A0A2I4D9Q7	Probable E3 ubiquitin-protein ligase HERC3.	RBR-type E3 ubiquitin transferase.	0.405
LOC106520213	herc4	A0A2I4BIT4	A0A2I4AZH9	Probable E3 ubiquitin-protein ligase HERC3.	Probable E3 ubiquitin-protein ligase HERC4.	0.903
LOC106520213	ube2l3	A0A2I4BIT4	A0A2I4D1L4	Probable E3 ubiquitin-protein ligase HERC3.	Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.	0.529
LOC106521463	LOC106522194	A0A2I4BP01	A0A2I4BS66	Probable E3 ubiquitin-protein ligase HERC6 isoform X1.	Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.	0.580
LOC106521463	arih1	A0A2I4BP01	A0A2I4D9Q7	Probable E3 ubiquitin-protein ligase HERC6 isoform X1.	RBR-type E3 ubiquitin transferase.	0.405
LOC106521463	ube2l3	A0A2I4BP01	A0A2I4D1L4	Probable E3 ubiquitin-protein ligase HERC6 isoform X1.	Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.	0.529
LOC106522194	LOC106518163	A0A2I4BS66	A0A2I4BAJ1	Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.	RBR-type E3 ubiquitin transferase.	0.554
LOC106522194	LOC106520213	A0A2I4BS66	A0A2I4BIT4	Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.	Probable E3 ubiquitin-protein ligase HERC3.	0.580
LOC106522194	LOC106521463	A0A2I4BS66	A0A2I4BP01	Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.	Probable E3 ubiquitin-protein ligase HERC6 isoform X1.	0.580
LOC106522194	LOC106525297	A0A2I4BS66	A0A2I4C4M0	Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.	RBR-type E3 ubiquitin transferase.	0.554
LOC106522194	LOC106529126	A0A2I4BS66	A0A2I4CIV0	Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.	RBR-type E3 ubiquitin transferase.	0.554
LOC106522194	LOC106531208	A0A2I4BS66	A0A2I4CR36	Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-protein ligase E3A-like.	0.615
LOC106522194	LOC106532469	A0A2I4BS66	A0A2I4CVG3	Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-protein ligase E3A-like.	0.596
LOC106522194	LOC106535796	A0A2I4BS66	A0A2I4D7Y1	Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.	RBR-type E3 ubiquitin transferase.	0.554