15 items (Austrofundulus limnaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl39	60S ribosomal protein L39. (75 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (65 aa)
	rpl30	60S ribosomal protein L30. (116 aa)
	rpl37	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	rpl28	60S ribosomal protein L28. (137 aa)
	rpl7a	60S ribosomal protein L7a. (266 aa)
	rpl36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
	LOC106518874	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (403 aa)
	rpl18	60S ribosomal protein L18. (240 aa)
	rps8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
	rpl13a	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (205 aa)
	rpl27	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
	rps12	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (132 aa)
	rpl13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
	rpl8	60S ribosomal protein L8. (257 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106518874	rpl13	A0A2I4BDD6	A0A2I4CRV5	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
LOC106518874	rpl13a	A0A2I4BDD6	A0A2I4BRR1	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.999
LOC106518874	rpl18	A0A2I4BDD6	A0A2I4BK93	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L18.	0.999
LOC106518874	rpl27	A0A2I4BDD6	A0A2I4C2M5	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
LOC106518874	rpl28	A0A2I4BDD6	A0A2I4B2N4	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L28.	0.999
LOC106518874	rpl29	A0A2I4BDD6	A0A2I4AVR3	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
LOC106518874	rpl30	A0A2I4BDD6	A0A2I4B0S2	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L30.	0.999
LOC106518874	rpl36	A0A2I4BDD6	A0A2I4B705	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
LOC106518874	rpl37	A0A2I4BDD6	A0A2I4B2J8	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999
LOC106518874	rpl39	A0A2I4BDD6	A0A2I4AVH6	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L39.	0.999
LOC106518874	rpl7a	A0A2I4BDD6	A0A2I4B2T7	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L7a.	0.999
LOC106518874	rpl8	A0A2I4BDD6	A0A2I4CSY5	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L8.	0.999
LOC106518874	rps12	A0A2I4BDD6	A0A2I4C2X6	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
LOC106518874	rps8	A0A2I4BDD6	A0A2I4BL76	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.999
rpl13	LOC106518874	A0A2I4CRV5	A0A2I4BDD6	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.999
rpl13	rpl13a	A0A2I4CRV5	A0A2I4BRR1	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.999
rpl13	rpl18	A0A2I4CRV5	A0A2I4BK93	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	60S ribosomal protein L18.	0.999
rpl13	rpl27	A0A2I4CRV5	A0A2I4C2M5	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
rpl13	rpl28	A0A2I4CRV5	A0A2I4B2N4	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	60S ribosomal protein L28.	0.999
rpl13	rpl29	A0A2I4CRV5	A0A2I4AVR3	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999