14 items (Austrofundulus limnaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl23a	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (155 aa)
	rpl34	60S ribosomal protein L34. (123 aa)
	rps26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (129 aa)
	rplp1	60S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (114 aa)
	rps2	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (280 aa)
	rps25	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (123 aa)
	rpl32	60S ribosomal protein L32. (135 aa)
	rpl24	60S ribosomal protein L24. (157 aa)
	rpl14	60S ribosomal protein L14. (140 aa)
	rps3a	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (266 aa)
	rpl31	60S ribosomal protein L31. (124 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	rpl9	60S ribosomal protein L9 isoform X1. (193 aa)
	rps15	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (145 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpl14	rpl15	A0A2I4C2G0	A0A2I4CY59	60S ribosomal protein L14.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
rpl14	rpl23a	A0A2I4C2G0	A0A2I4AT37	60S ribosomal protein L14.	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.999
rpl14	rpl24	A0A2I4C2G0	A0A2I4BZ20	60S ribosomal protein L14.	60S ribosomal protein L24.	0.999
rpl14	rpl31	A0A2I4C2G0	A0A2I4CJE5	60S ribosomal protein L14.	60S ribosomal protein L31.	0.999
rpl14	rpl32	A0A2I4C2G0	A0A2I4BWI6	60S ribosomal protein L14.	60S ribosomal protein L32.	0.999
rpl14	rpl34	A0A2I4C2G0	A0A2I4AWJ1	60S ribosomal protein L14.	60S ribosomal protein L34.	0.999
rpl14	rpl9	A0A2I4C2G0	A0A2I4D6P2	60S ribosomal protein L14.	60S ribosomal protein L9 isoform X1.	0.999
rpl14	rplp1	A0A2I4C2G0	A0A2I4BAI9	60S ribosomal protein L14.	60S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.999
rpl14	rps15	A0A2I4C2G0	A0A2I4DC30	60S ribosomal protein L14.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
rpl14	rps2	A0A2I4C2G0	A0A2I4BRG9	60S ribosomal protein L14.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.999
rpl14	rps25	A0A2I4C2G0	A0A2I4BS07	60S ribosomal protein L14.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
rpl14	rps26	A0A2I4C2G0	A0A2I4BA27	60S ribosomal protein L14.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
rpl14	rps3a	A0A2I4C2G0	A0A2I4C813	60S ribosomal protein L14.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
rpl15	rpl14	A0A2I4CY59	A0A2I4C2G0	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	60S ribosomal protein L14.	0.999
rpl15	rpl23a	A0A2I4CY59	A0A2I4AT37	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.999
rpl15	rpl24	A0A2I4CY59	A0A2I4BZ20	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	60S ribosomal protein L24.	0.999
rpl15	rpl31	A0A2I4CY59	A0A2I4CJE5	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	60S ribosomal protein L31.	0.999
rpl15	rpl32	A0A2I4CY59	A0A2I4BWI6	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	60S ribosomal protein L32.	0.999
rpl15	rpl34	A0A2I4CY59	A0A2I4AWJ1	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	60S ribosomal protein L34.	0.999
rpl15	rpl9	A0A2I4CY59	A0A2I4D6P2	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	60S ribosomal protein L9 isoform X1.	0.999