(28 nodes) Telencephalon cell migration network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sun1	SUN domain-containing protein 1. (994 aa)
	LOC106510847	Serum response factor-like. (385 aa)
	pex13	Peroxisome biogenesis factor 13. (408 aa)
	foxg1	Forkhead box protein G1. (430 aa)
	disc1	Disrupted in schizophrenia 1 protein. (801 aa)
	cdk5r1	Cyclin-dependent kinase 5 activator. (302 aa)
	LOC106522151	Forkhead box protein G1-like. (466 aa)
	srf	Serum response factor isoform X1. (485 aa)
	htr6	5-hydroxytryptamine receptor 6; Belongs to the G-protein coupled receptor 1 family. (444 aa)
	sun2	SUN domain-containing protein 2 isoform X1. (626 aa)
	cdk5r2	Cyclin-dependent kinase 5 activator 2. (296 aa)
	reln	Reelin isoform X1. (3480 aa)
	LOC106524642	Uncharacterized protein C16orf45 homolog. (199 aa)
	LOC106525243	Cyclin-dependent kinase 5 activator. (334 aa)
	lrrk2	Leucine-rich repeat serine/threonine-protein kinase 2. (2528 aa)
	dcx	Neuronal migration protein doublecortin. (347 aa)
	LOC106528223	SUN domain-containing protein 1-like isoform X1. (854 aa)
	cntn2	Contactin-2. (308 aa)
	LOC106530085	Cyclin-dependent kinase 5 activator. (313 aa)
	LOC106530203	ADP-ribosylation factor-like protein 13B. (402 aa)
	LOC106530204	ADP-ribosylation factor-like protein 13B; Belongs to the small GTPase superfamily. Arf family. (244 aa)
	LOC106531594	Forkhead box protein G1-like. (417 aa)
	cdk5	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	LOC106534469	Contactin-2-like. (1039 aa)
	LOC106536478	EF-hand domain-containing protein 1-like. (225 aa)
	LOC106536703	Serum response factor-like. (519 aa)
	LOC106536909	Pro-neuregulin-3, membrane-bound isoform-like. (668 aa)
	LOC106537150	Pro-neuregulin-3, membrane-bound isoform-like. (354 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106510847	LOC106536703	A0A2I4AHR9	A0A2I4DB71	Serum response factor-like.	Serum response factor-like.	0.902
LOC106510847	srf	A0A2I4AHR9	A0A2I4BS82	Serum response factor-like.	Serum response factor isoform X1.	0.901
LOC106522151	LOC106531594	A0A2I4BRX3	A0A2I4CSI9	Forkhead box protein G1-like.	Forkhead box protein G1-like.	0.907
LOC106522151	foxg1	A0A2I4BRX3	A0A2I4AII3	Forkhead box protein G1-like.	Forkhead box protein G1.	0.904
LOC106525243	cdk5	A0A2I4C4D5	A0A2I4CZ65	Cyclin-dependent kinase 5 activator.	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily.	0.902
LOC106530085	cdk5	A0A2I4CM78	A0A2I4CZ65	Cyclin-dependent kinase 5 activator.	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily.	0.902
LOC106531594	LOC106522151	A0A2I4CSI9	A0A2I4BRX3	Forkhead box protein G1-like.	Forkhead box protein G1-like.	0.907
LOC106531594	foxg1	A0A2I4CSI9	A0A2I4AII3	Forkhead box protein G1-like.	Forkhead box protein G1.	0.905
LOC106536703	LOC106510847	A0A2I4DB71	A0A2I4AHR9	Serum response factor-like.	Serum response factor-like.	0.902
LOC106536703	srf	A0A2I4DB71	A0A2I4BS82	Serum response factor-like.	Serum response factor isoform X1.	0.904
LOC106536909	LOC106537150	A0A2I4DBU3	A0A2I4DCK8	Pro-neuregulin-3, membrane-bound isoform-like.	Pro-neuregulin-3, membrane-bound isoform-like.	0.900
LOC106537150	LOC106536909	A0A2I4DCK8	A0A2I4DBU3	Pro-neuregulin-3, membrane-bound isoform-like.	Pro-neuregulin-3, membrane-bound isoform-like.	0.900
cdk5	LOC106525243	A0A2I4CZ65	A0A2I4C4D5	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 5 activator.	0.902
cdk5	LOC106530085	A0A2I4CZ65	A0A2I4CM78	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 5 activator.	0.902
cdk5	cdk5r1	A0A2I4CZ65	A0A2I4BR13	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 5 activator.	0.902
cdk5	cdk5r2	A0A2I4CZ65	A0A2I4BW26	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 5 activator 2.	0.902
cdk5r1	cdk5	A0A2I4BR13	A0A2I4CZ65	Cyclin-dependent kinase 5 activator.	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily.	0.902
cdk5r2	cdk5	A0A2I4BW26	A0A2I4CZ65	Cyclin-dependent kinase 5 activator 2.	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily.	0.902
foxg1	LOC106522151	A0A2I4AII3	A0A2I4BRX3	Forkhead box protein G1.	Forkhead box protein G1-like.	0.904
foxg1	LOC106531594	A0A2I4AII3	A0A2I4CSI9	Forkhead box protein G1.	Forkhead box protein G1-like.	0.905