(16 nodes) Lipoprotein particle receptor activity network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ldlr	Low-density lipoprotein receptor. (892 aa)
	LOC106521625	Low-density lipoprotein receptor-related protein 8-like isoform X1. (999 aa)
	stab1	Stabilin-1. (2548 aa)
	LOC106523514	Low-density lipoprotein receptor-related protein 8-like. (1020 aa)
	cd36	Platelet glycoprotein 4; Belongs to the CD36 family. (472 aa)
	lrp10	Low-density lipoprotein receptor-related protein 10. (790 aa)
	lrp12	Low-density lipoprotein receptor-related protein 12 isoform X1. (875 aa)
	scarb1	Scavenger receptor class B member 1 isoform X1; Belongs to the CD36 family. (521 aa)
	lrp3	Low-density lipoprotein receptor-related protein 3 isoform X1. (796 aa)
	LOC106535174	Low-density lipoprotein receptor-like. (903 aa)
	stab2	Stabilin-2. (2359 aa)
	LOC106536945	Very low-density lipoprotein receptor-like. (290 aa)
	vldlr	Very low-density lipoprotein receptor. (845 aa)
	LOC106511764	Stabilin-2-like. (102 aa)
	LOC106511804	Stabilin-1-like. (247 aa)
	LOC106515245	Low-density lipoprotein receptor-like. (861 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106515245	LOC106535174	A0A2I4AY24	A0A2I4D5Q4	Low-density lipoprotein receptor-like.	Low-density lipoprotein receptor-like.	0.902
LOC106515245	ldlr	A0A2I4AY24	A0A2I4B9F9	Low-density lipoprotein receptor-like.	Low-density lipoprotein receptor.	0.902
LOC106535174	LOC106515245	A0A2I4D5Q4	A0A2I4AY24	Low-density lipoprotein receptor-like.	Low-density lipoprotein receptor-like.	0.902
LOC106535174	ldlr	A0A2I4D5Q4	A0A2I4B9F9	Low-density lipoprotein receptor-like.	Low-density lipoprotein receptor.	0.900
ldlr	LOC106515245	A0A2I4B9F9	A0A2I4AY24	Low-density lipoprotein receptor.	Low-density lipoprotein receptor-like.	0.902
ldlr	LOC106535174	A0A2I4B9F9	A0A2I4D5Q4	Low-density lipoprotein receptor.	Low-density lipoprotein receptor-like.	0.900